Pan-cancer stratification of solid human epithelial tumors and cancer cell lines reveals commonalities and tissue-specific features of the CpG island methylator phenotype

Characterizing DNA methylation alterations from The Cancer Genome Atlas

(2014) Daniel J. Weisenberger   JOURNAL OF CLINICAL INVESTIGATION

A DNA methylation-based definition of biologically distinct breast cancer subtypes

(2014) Olafur A. Stefansson et al.   Molecular Oncology

Comprehensive molecular characterization of urothelial bladder carcinoma

(2014)   NATURE

The KDM5 family of histone demethylases as targets in oncology drug discovery

(2014) Peter Birk Rasmussen et al.   Epigenomics

Pan-cancer patterns of DNA methylation

(2014) Tania Witte et al.   Genome Medicine

A KRAS-directed transcriptional silencing pathway that mediates the CpG island methylator phenotype

(2014) Ryan W Serra et al.   eLife

The CpG Island Methylator Phenotype: What's in a Name?

(2013) L. A. E. Hughes et al.   CANCER RESEARCH

Interplay between the Cancer Genome and Epigenome

(2013) Hui Shen et al.   CELL

Recurrent patterns of DNA methylation in theZNF154,CASP8, andVHLpromoters across a wide spectrum of human solid epithelial tumors and cancer cell lines

(2013) Francisco Sánchez-Vega et al.   Epigenetics

An evaluation of analysis pipelines for DNA methylation profiling using the Illumina HumanMethylation450 BeadChip platform

(2013) Francesco Marabita et al.   Epigenetics

Integrated genomic characterization of endometrial carcinoma

(2013) Gad Getz et al.   NATURE

Emerging landscape of oncogenic signatures across human cancers

(2013) Giovanni Ciriello et al.   NATURE GENETICS

The Spectrum of SWI/SNF Mutations, Ubiquitous in Human Cancers

(2013) A. Hunter Shain et al.   PLoS One

Exploring TCGA Pan-Cancer Data at the UCSC Cancer Genomics Browser

(2013) Melissa S. Cline et al.   Scientific Reports

A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data

(2012) Andrew E. Teschendorff et al.   BIOINFORMATICS

LRpath analysis reveals common pathways dysregulated via DNA methylation across cancer types

(2012) Jung H Kim et al.   BMC GENOMICS

Assessment of colorectal cancer molecular features along bowel subsites challenges the conception of distinct dichotomy of proximal versus distal colorectum

(2012) Mai Yamauchi et al.   GUT

Comprehensive molecular characterization of human colon and rectal cancer

(2012)   NATURE

Comprehensive molecular portraits of human breast tumours

(2012) Daniel C. Koboldt et al.   NATURE

Understanding the language of Lys36 methylation at histone H3

(2012) Eric J. Wagner et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Chromatin 'resetting' during transcription elongation: a central role for methylated H3K36

(2012) Jill S Butler et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Differential Analysis of Ovarian and Endometrial Cancers Identifies a Methylator Phenotype

(2012) Diana L. Kolbe et al.   PLoS One

Tissue of origin determines cancer-associated CpG island promoter hypermethylation patterns

(2012) Duncan Sproul et al.   GENOME BIOLOGY

Endometrial Serous Carcinoma: Its Molecular Characteristics and Histology-Specific Treatment Strategies

(2012) Kentaro Nakayama et al.   Cancers

ADP-Ribosylarginine Hydrolase Regulates Cell Proliferation and Tumorigenesis

(2011) J. Kato et al.   CANCER RESEARCH

Integrated genomic analyses of ovarian carcinoma

(2011) D. Bell et al.   NATURE

Increased methylation variation in epigenetic domains across cancer types

(2011) Kasper Daniel Hansen et al.   NATURE GENETICS

Cancer epigenetics reaches mainstream oncology

(2011) Manuel Rodríguez-Paredes et al.   NATURE MEDICINE

Breast Cancer Methylomes Establish an Epigenomic Foundation for Metastasis

(2011) F. Fang et al.   Science Translational Medicine

Histone ADP-ribosylation in DNA repair, replication and transcription

(2011) Simon Messner et al.   TRENDS IN CELL BIOLOGY

Chromosome 9p deletions identify an aggressive phenotype of clear cell renal cell carcinoma

(2010) Jeffrey La Rochelle et al.   CANCER

The T-box transcription factor Brachyury promotes epithelial-mesenchymal transition in human tumor cells

(2010) Romaine I. Fernando et al.   JOURNAL OF CLINICAL INVESTIGATION

Epigenetic modifications and human disease

(2010) Anna Portela et al.   NATURE BIOTECHNOLOGY

CIMP Status of Interval Colon Cancers: Another Piece to the Puzzle

(2009) Mustafa A Arain et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

MGMT and MLH1 promoter methylation versus APC, KRAS and BRAF gene mutations in colorectal cancer: indications for distinct pathways and sequence of events

(2009) S. de Vogel et al.   ANNALS OF ONCOLOGY