A standardized kit for automated quantitative assessment of candidate protein biomarkers in human plasma

Qualis-SIS: Automated Standard Curve Generation and Quality Assessment for Multiplexed Targeted Quantitative Proteomic Experiments with Labeled Standards

(2015) Yassene Mohammed et al.   JOURNAL OF PROTEOME RESEARCH

Large-Scale Interlaboratory Study to Develop, Analytically Validate and Apply Highly Multiplexed, Quantitative Peptide Assays to Measure Cancer-Relevant Proteins in Plasma

(2015) Susan E. Abbatiello et al.   MOLECULAR & CELLULAR PROTEOMICS

Colorectal cancer biomarker discovery and validation using LC-MS/MS-based proteomics in blood: truth or dare?

(2014) Ank Reumer et al.   Expert Review of Proteomics

MRM for the verification of cancer biomarker proteins: recent applications to human plasma and serum

(2014) Andrew G Chambers et al.   Expert Review of Proteomics

DIGESTIF: A Universal Quality Standard for the Control of Bottom-Up Proteomics Experiments

(2014) Dorothée Lebert et al.   JOURNAL OF PROTEOME RESEARCH

Enhanced sensitivity and multiplexing with 2D LC/MRM-MS and labeled standards for deeper and more comprehensive protein quantitation

(2014) Andrew J. Percy et al.   Journal of Proteomics

CPTAC Assay Portal: a repository of targeted proteomic assays

(2014) Jeffrey R Whiteaker et al.   NATURE METHODS

Effect of quality characteristics of single sample preparation steps in the precision and coverage of proteomic studies—A review

(2013) Thomas Krüger et al.   ANALYTICA CHIMICA ACTA

Advances in multiplexed MRM-based protein biomarker quantitation toward clinical utility

(2013) Andrew J. Percy et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Targeted quantitation of CVD-linked plasma proteins for biomarker verification and validation

(2013) Andrew J Percy et al.   Expert Review of Proteomics

Developments in biobanking workflow standardization providing sample integrity and stability

(2013) Johan Malm et al.   Journal of Proteomics

Applications of selected reaction monitoring (SRM)-mass spectrometry (MS) for quantitative measurement of signaling pathways

(2013) Yingxin Zhao et al.   METHODS

Interlaboratory studies and initiatives developing standards for proteomics

(2013) Alexander R. Ivanov et al.   PROTEOMICS

Multiplexed MRM-based quantitation of candidate cancer biomarker proteins in undepleted and non-enriched human plasma

(2013) Andrew J. Percy et al.   PROTEOMICS

Pre-analytical and analytical variability in absolute quantitative MRM-based plasma proteomic studies

(2013) Andrew J Percy et al.   Bioanalysis

Comparison of standard- and nano-flow liquid chromatography platforms for MRM-based quantitation of putative plasma biomarker proteins

(2012) Andrew J. Percy et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

The evolution of biobanking best practices

(2012) Jim Vaught et al.   CLINICA CHIMICA ACTA

Multiple-Reaction Monitoring-Mass Spectrometric Assays Can Accurately Measure the Relative Protein Abundance in Complex Mixtures

(2012) A. N. Hoofnagle et al.   CLINICAL CHEMISTRY

Standardization and Utilization of Biobank Resources in Clinical Protein Science with Examples of Emerging Applications

(2012) György Marko-Varga et al.   JOURNAL OF PROTEOME RESEARCH

Interlaboratory Reproducibility of Selective Reaction Monitoring Assays Using Multiple Upfront Analyte Enrichment Strategies

(2012) Amol Prakash et al.   JOURNAL OF PROTEOME RESEARCH

Multiplex Targeted Proteomic Assay for Biomarker Detection in Plasma: A Pancreatic Cancer Biomarker Case Study

(2012) Sheng Pan et al.   JOURNAL OF PROTEOME RESEARCH

Standardized Protocols for Quality Control of MRM-based Plasma Proteomic Workflows

(2012) Andrew J. Percy et al.   JOURNAL OF PROTEOME RESEARCH

Selected reaction monitoring–based proteomics: workflows, potential, pitfalls and future directions

(2012) Paola Picotti et al.   NATURE METHODS

Quantitative analysis of peptides and proteins in biomedicine by targeted mass spectrometry

(2012) Michael A Gillette et al.   NATURE METHODS

Antibody-free, targeted mass-spectrometric approach for quantification of proteins at low picogram per milliliter levels in human plasma/serum

(2012) T. Shi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MRM-based multiplexed quantitation of 67 putative cardiovascular disease biomarkers in human plasma

(2012) Dominik Domanski et al.   PROTEOMICS

Mass spectrometry-based targeted quantitative proteomics: Achieving sensitive and reproducible detection of proteins

(2012) Emily S. Boja et al.   PROTEOMICS

Using iRT, a normalized retention time for more targeted measurement of peptides

(2012) Claudia Escher et al.   PROTEOMICS

Status and Prospects for Discovery and Verification of New Biomarkers of Cardiovascular Disease by Proteomics

(2011) Robert E. Gerszten et al.   CIRCULATION RESEARCH

Interlaboratory Evaluation of Automated, Multiplexed Peptide Immunoaffinity Enrichment Coupled to Multiple Reaction Monitoring Mass Spectrometry for Quantifying Proteins in Plasma

(2011) Eric Kuhn et al.   MOLECULAR & CELLULAR PROTEOMICS

A High-Confidence Human Plasma Proteome Reference Set with Estimated Concentrations in PeptideAtlas

(2011) Terry Farrah et al.   MOLECULAR & CELLULAR PROTEOMICS

Sequential Multiplexed Analyte Quantification Using Peptide Immunoaffinity Enrichment Coupled to Mass Spectrometry

(2011) Jeffrey R. Whiteaker et al.   MOLECULAR & CELLULAR PROTEOMICS

Quantitative Mass Spectrometry Evaluation of Human Retinol Binding Protein 4 and Related Variants

(2011) Urban A. Kiernan et al.   PLoS One

Mutant proteins as cancer-specific biomarkers

(2011) Q. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Assay Development for the Determination of Phosphorylation Stoichiometry Using Multiple Reaction Monitoring Methods with and without Phosphatase Treatment: Application to Breast Cancer Signaling Pathways

(2010) Dominik Domanski et al.   ANALYTICAL CHEMISTRY

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

(2010) Brendan MacLean et al.   BIOINFORMATICS

Simultaneous Quantification of Apolipoprotein A-I and Apolipoprotein B by Liquid-Chromatography-Multiple- Reaction-Monitoring Mass Spectrometry

(2010) S. A. Agger et al.   CLINICAL CHEMISTRY

Depletion of Abundant Plasma Proteins and Limitations of Plasma Proteomics

(2010) Chengjian Tu et al.   JOURNAL OF PROTEOME RESEARCH

Protein-Based Multiplex Assays: Mock Presubmissions to the US Food and Drug Administration

(2009) F. E. Regnier et al.   CLINICAL CHEMISTRY

The Bottleneck in the Cancer Biomarker Pipeline and Protein Quantification through Mass Spectrometry-Based Approaches: Current Strategies for Candidate Verification

(2009) S. Makawita et al.   CLINICAL CHEMISTRY

The Clinical Plasma Proteome: A Survey of Clinical Assays for Proteins in Plasma and Serum

(2009) N. L. Anderson   CLINICAL CHEMISTRY

Multiple Reaction Monitoring-based, Multiplexed, Absolute Quantitation of 45 Proteins in Human Plasma

(2009) Michael A. Kuzyk et al.   MOLECULAR & CELLULAR PROTEOMICS

An Automated and Multiplexed Method for High Throughput Peptide Immunoaffinity Enrichment and Multiple Reaction Monitoring Mass Spectrometry-based Quantification of Protein Biomarkers

(2009) Jeffrey R. Whiteaker et al.   MOLECULAR & CELLULAR PROTEOMICS

Quantification of Cardiovascular Biomarkers in Patient Plasma by Targeted Mass Spectrometry and Stable Isotope Dilution

(2009) Hasmik Keshishian et al.   MOLECULAR & CELLULAR PROTEOMICS

High-Abundance Polypeptides of the Human Plasma Proteome Comprising the Top 4 Logs of Polypeptide Abundance

(2008) G. L. Hortin et al.   CLINICAL CHEMISTRY

QCAL—a Novel Standard for Assessing Instrument Conditions for Proteome Analysis

(2008) C EYERS et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY