Mass spectrometry-based targeted quantitative proteomics: Achieving sensitive and reproducible detection of proteins

ATAQS: A computational software tool for high throughput transition optimization and validation for selected reaction monitoring mass spectrometry

(2011) Mi-Youn K Brusniak et al.   BMC BIOINFORMATICS

Use of multiple reaction monitoring for multiplex analysis of colorectal cancer-associated proteins in human feces

(2011) Ching-Seng Ang et al.   ELECTROPHORESIS

Selected reaction monitoring applied to proteomics

(2011) Sebastien Gallien et al.   JOURNAL OF MASS SPECTROMETRY

Quantitative Targeted Absolute Proteomics-Based Adme Research as A New Path to Drug Discovery and Development: Methodology, Advantages, Strategy, and Prospects

(2011) Sumio Ohtsuki et al.   JOURNAL OF PHARMACEUTICAL SCIENCES

Targeted mass spectrometry approaches for protein biomarker verification

(2011) Zhaojing Meng et al.   Journal of Proteomics

Evaluation of Large Scale Quantitative Proteomic Assay Development Using Peptide Affinity-based Mass Spectrometry

(2011) Jeffrey R. Whiteaker et al.   MOLECULAR & CELLULAR PROTEOMICS

A pipeline that integrates the discovery and verification of plasma protein biomarkers reveals candidate markers for cardiovascular disease

(2011) Terri A Addona et al.   NATURE BIOTECHNOLOGY

mProphet: automated data processing and statistical validation for large-scale SRM experiments

(2011) Lukas Reiter et al.   NATURE METHODS

Absolute quantification of protein and post-translational modification abundance with stable isotope–labeled synthetic peptides

(2011) Arminja N Kettenbach et al.   Nature Protocols

Mutant proteins as cancer-specific biomarkers

(2011) Q. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-throughput ectopic expression screen for tamoxifen resistance identifies an atypical kinase that blocks autophagy

(2011) Laura Gonzalez-Malerva et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The ABRF Proteomics Research Group Studies: Educational exercises for qualitative and quantitative proteomic analyses

(2011) David B. Friedman et al.   PROTEOMICS

A database of reaction monitoring mass spectrometry assays for elucidating therapeutic response in cancer

(2011) Elizabeth R. Remily-Wood et al.   Proteomics Clinical Applications

Effect of Collision Energy Optimization on the Measurement of Peptides by Selected Reaction Monitoring (SRM) Mass Spectrometry

(2010) Brendan MacLean et al.   ANALYTICAL CHEMISTRY

Predicting Retention Time Shifts Associated with Variation of the Gradient Slope in Peptide RP-HPLC

(2010) Vic Spicer et al.   ANALYTICAL CHEMISTRY

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

(2010) Brendan MacLean et al.   BIOINFORMATICS

The evolving role of mass spectrometry in cancer biomarker discovery

(2010) Pei Wang et al.   CANCER BIOLOGY & THERAPY

Integrated Genomic Analysis Identifies Clinically Relevant Subtypes of Glioblastoma Characterized by Abnormalities in PDGFRA, IDH1, EGFR, and NF1

(2010) Roel G.W. Verhaak et al.   CANCER CELL

Clinical Protein Science and Bioanalytical Mass Spectrometry with an Emphasis on Lung Cancer

(2010) Ákos Végvári et al.   CHEMICAL REVIEWS

Simultaneous Quantification of Apolipoprotein A-I and Apolipoprotein B by Liquid-Chromatography-Multiple- Reaction-Monitoring Mass Spectrometry

(2010) S. A. Agger et al.   CLINICAL CHEMISTRY

Quantitative immunohistochemistry in lung cancer: clinical perspective.

(2010) Ewa Szutowicz et al.   FOLIA HISTOCHEMICA ET CYTOBIOLOGICA

Mass Spectrometry Mapping of Epidermal Growth Factor Receptor Phosphorylation Related to Oncogenic Mutations and Tyrosine Kinase Inhibitor Sensitivity

(2010) Guolin Zhang et al.   JOURNAL OF PROTEOME RESEARCH

Evolution of Clinical Proteomics and its Role in Medicine

(2010) Emily Boja et al.   JOURNAL OF PROTEOME RESEARCH

Collision Energy Optimization of b- and y-Ions for Multiple Reaction Monitoring Mass Spectrometry

(2010) Carly A. Holstein (Sherwood) et al.   JOURNAL OF PROTEOME RESEARCH

Towards the development of an immuno MALDI (iMALDI) mass spectrometry assay for the diagnosis of hypertension

(2010) Jennifer D. Reid et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Reconstructing the pipeline by introducing multiplexed multiple reaction monitoring mass spectrometry for cancer biomarker verification: An NCI-CPTC initiative perspective

(2010) Henry Rodriguez et al.   Proteomics Clinical Applications

Multiplex assays for biomarker research and clinical application: Translational science coming of age

(2010) Qin Fu et al.   Proteomics Clinical Applications

Absolute Quantification of Phosphorylation on the Kinase Activation Loop of Cellular Focal Adhesion Kinase by Stable Isotope Dilution Liquid Chromatography/Mass Spectrometry

(2009) Eugene Ciccimaro et al.   ANALYTICAL CHEMISTRY

Multiple Reaction Monitoring Cubed for Protein Quantification at the Low Nanogram/Milliliter Level in Nondepleted Human Serum

(2009) T. Fortin et al.   ANALYTICAL CHEMISTRY

Prognostic effect of activated EGFR expression in human colon carcinomas: comparison with EGFR status

(2009) R L Rego et al.   BRITISH JOURNAL OF CANCER

Protein-Based Multiplex Assays: Mock Presubmissions to the US Food and Drug Administration

(2009) F. E. Regnier et al.   CLINICAL CHEMISTRY

Integration of Proteomic-Based Tools for Improved Biomarkers of Myocardial Injury

(2009) R. E. Gerszten et al.   CLINICAL CHEMISTRY

Automated Detection of Inaccurate and Imprecise Transitions in Peptide Quantification by Multiple Reaction Monitoring Mass Spectrometry

(2009) S. E. Abbatiello et al.   CLINICAL CHEMISTRY

The Clinical Plasma Proteome: A Survey of Clinical Assays for Proteins in Plasma and Serum

(2009) N. L. Anderson   CLINICAL CHEMISTRY

Comparison of Multiplex Immunoassay Platforms

(2009) Q. Fu et al.   CLINICAL CHEMISTRY

Developing Multiplexed Assays for Troponin I and Interleukin-33 in Plasma by Peptide Immunoaffinity Enrichment and Targeted Mass Spectrometry

(2009) E. Kuhn et al.   CLINICAL CHEMISTRY

Multiplexed Cell Signaling Analysis of Metastatic and Nonmetastatic Colorectal Cancer Reveals COX2-EGFR Signaling Activation as a Potential Prognostic Pathway Biomarker

(2009) Mariaelena Pierobon et al.   Clinical Colorectal Cancer

Multiplexed microbead immunoassays by flow cytometry for molecular profiling: Basic concepts and proteomics applications

(2009) V. V Krishhan et al.   CRITICAL REVIEWS IN BIOTECHNOLOGY

Multiplex immune serum biomarker profiling in sarcoidosis and systemic sclerosis

(2009) P. Beirne et al.   EUROPEAN RESPIRATORY JOURNAL

The fundamental flaws of immunoassays and potential solutions using tandem mass spectrometry

(2009) Andrew N. Hoofnagle et al.   JOURNAL OF IMMUNOLOGICAL METHODS

Automated screening of monoclonal antibodies for SISCAPA assays using a magnetic bead processor and liquid chromatography-selected reaction monitoring-mass spectrometry

(2009) Regine M. Schoenherr et al.   JOURNAL OF IMMUNOLOGICAL METHODS

Microfluidic chips for mass spectrometry-based proteomics

(2009) Jeonghoon Lee et al.   JOURNAL OF MASS SPECTROMETRY

Quantitative Serum Proteomics Using Dual Stable Isotope Coding andnanoLC-MS/MSMS

(2009) Hong Wang et al.   JOURNAL OF PROTEOME RESEARCH

Quantitative Analysis of an Aberrant Glycoform of TIMP1 from Colon Cancer Serum by L-PHA-Enrichment and SISCAPA with MRM Mass Spectrometry

(2009) Yeong Hee Ahn et al.   JOURNAL OF PROTEOME RESEARCH

Verification of Biomarkers for Diabetic Retinopathy by Multiple Reaction Monitoring

(2009) Kyunggon Kim et al.   JOURNAL OF PROTEOME RESEARCH

Isotope dilution strategies for absolute quantitative proteomics

(2009) Virginie Brun et al.   Journal of Proteomics

A Human Proteome Detection and Quantitation Project

(2009) N. Leigh Anderson et al.   MOLECULAR & CELLULAR PROTEOMICS

SISCAPA Peptide Enrichment on Magnetic Beads Using an In-line Bead Trap Device

(2009) N. Leigh Anderson et al.   MOLECULAR & CELLULAR PROTEOMICS

Multiple Reaction Monitoring-based, Multiplexed, Absolute Quantitation of 45 Proteins in Human Plasma

(2009) Michael A. Kuzyk et al.   MOLECULAR & CELLULAR PROTEOMICS

Quantification of Cardiovascular Biomarkers in Patient Plasma by Targeted Mass Spectrometry and Stable Isotope Dilution

(2009) Hasmik Keshishian et al.   MOLECULAR & CELLULAR PROTEOMICS

Prediction of high-responding peptides for targeted protein assays by mass spectrometry

(2009) Vincent A Fusaro et al.   NATURE BIOTECHNOLOGY

Multi-site assessment of the precision and reproducibility of multiple reaction monitoring–based measurements of proteins in plasma

(2009) Terri A Addona et al.   NATURE BIOTECHNOLOGY

A HUPO test sample study reveals common problems in mass spectrometry–based proteomics

(2009) Alexander W Bell et al.   NATURE METHODS

High-throughput generation of selected reaction-monitoring assays for proteins and proteomes

(2009) Paola Picotti et al.   NATURE METHODS

The potential of optical proteomic technologies to individualize prognosis and guide rational treatment for cancer patients

(2009) Muireann T. Kelleher et al.   Targeted Oncology

Quantification of Thyroglobulin, a Low-Abundance Serum Protein, by Immunoaffinity Peptide Enrichment and Tandem Mass Spectrometry

(2008) A. N. Hoofnagle et al.   CLINICAL CHEMISTRY

PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows

(2008) Eric W Deutsch et al.   EMBO REPORTS

Enhanced Detection of Low Abundance Human Plasma Proteins Using a Tandem IgY12-SuperMix Immunoaffinity Separation Strategy

(2008) Wei-Jun Qian et al.   MOLECULAR & CELLULAR PROTEOMICS

MRMer, an Interactive Open Source and Cross-platform System for Data Extraction and Visualization of Multiple Reaction Monitoring Experiments

(2008) Daniel B. Martin et al.   MOLECULAR & CELLULAR PROTEOMICS

Comprehensive genomic characterization defines human glioblastoma genes and core pathways

(2008) Roger McLendon et al.   NATURE

A database of mass spectrometric assays for the yeast proteome

(2008) Paola Picotti et al.   NATURE METHODS