Genotyping by sequencing reveals the interspecific C. maxima / C. reticulata admixture along the genomes of modern citrus varieties of mandarins, tangors, tangelos, orangelos and grapefruits

Phylogenetic origin of limes and lemons revealed by cytoplasmic and nuclear markers

(2016) Franck Curk et al.   ANNALS OF BOTANY

SNP Discovery by GBS in Olive and the Construction of a High-Density Genetic Linkage Map

(2016) Ahmet İpek et al.   BIOCHEMICAL GENETICS

Parental diagnosis of satsuma mandarin (Citrus unshiu Marc.) revealed by nuclear and cytoplasmic markers

(2016) Hiroshi Fujii et al.   BREEDING SCIENCE

A High-Density SNP Genetic Linkage Map and QTL Analysis of Growth-Related Traits in a Hybrid Family of Oysters ( Crassostrea gigas × Crassostrea angulata ) Using Genotyping-by-Sequencing

(2016) Jinpeng Wang et al.   G3-Genes Genomes Genetics

Hybrid Origins of Citrus Varieties Inferred from DNA Marker Analysis of Nuclear and Organelle Genomes

(2016) Tokurou Shimizu et al.   PLoS One

Genetic mapping of centromeres in the nine Citrus clementina chromosomes using half-tetrad analysis and recombination patterns in unreduced and haploid gametes

(2015) Pablo Aleza et al.   BMC PLANT BIOLOGY

Salt tolerance traits revealed in mandarins (Citrus reticulata Blanco) are mainly related to root-to-shoot Cl− translocation limitation and leaf detoxification processes

(2015) Jihène Ben Yahmed et al.   SCIENTIA HORTICULTURAE

Genetic diversity and population structure analysis of mandarin germplasm by nuclear, chloroplastic and mitochondrial markers

(2015) Andres Garcia-Lor et al.   Tree Genetics & Genomes

Nuclear Species-Diagnostic SNP Markers Mined from 454 Amplicon Sequencing Reveal Admixture Genomic Structure of Modern Citrus Varieties

(2015) Franck Curk et al.   PLoS One

The Distribution of Coumarins and Furanocoumarins in Citrus Species Closely Matches Citrus Phylogeny and Reflects the Organization of Biosynthetic Pathways

(2015) Audray Dugrand-Judek et al.   PLoS One

Next generation haplotyping to decipher nuclear genomic interspecific admixture in Citrusspecies: analysis of chromosome 2

(2014) Franck Curk et al.   BMC GENETICS

Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication

(2014) G Albert Wu et al.   NATURE BIOTECHNOLOGY

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

(2014) Jeffrey C. Glaubitz et al.   PLoS One

Genotyping-by-Sequencing for Populus Population Genomics: An Assessment of Genome Sampling Patterns and Filtering Approaches

(2014) Martin P. Schilling et al.   PLoS One

Saturated linkage map construction in Rubus idaeus using genotyping by sequencing and genome-independent imputation

(2013) Judson A Ward et al.   BMC GENOMICS

Marker Density and Read Depth for Genotyping Populations Using Genotyping-by-Sequencing

(2013) T. M. Beissinger et al.   GENETICS

An Improved Genotyping by Sequencing (GBS) Approach Offering Increased Versatility and Efficiency of SNP Discovery and Genotyping

(2013) Humira Sonah et al.   PLoS One

A Six Nuclear Gene Phylogeny of Citrus (Rutaceae) Taking into Account Hybridization and Lineage Sorting

(2013) Chandrika Ramadugu et al.   PLoS One

A nuclear phylogenetic analysis: SNPs, indels and SSRs deliver new insights into the relationships in the ‘true citrus fruit trees’ group (Citrinae, Rutaceae) and the origin of cultivated species

(2012) Andres Garcia-Lor et al.   ANNALS OF BOTANY

SNP mining in C. clementina BAC end sequences; transferability in the Citrus genus (Rutaceae), phylogenetic inferences and perspectives for genetic mapping

(2012) Patrick Ollitrault et al.   BMC GENOMICS

A reference genetic map of C. clementina hort. ex Tan.; citrus evolution inferences from comparative mapping

(2012) Patrick Ollitrault et al.   BMC GENOMICS

A map of rice genome variation reveals the origin of cultivated rice

(2012) Xuehui Huang et al.   NATURE

Comparative population genomics of maize domestication and improvement

(2012) Matthew B Hufford et al.   NATURE GENETICS

The draft genome of sweet orange (Citrus sinensis)

(2012) Qiang Xu et al.   NATURE GENETICS

High Resolution Genetic Mapping by Genome Sequencing Reveals Genome Duplication and Tetraploid Genetic Structure of the Diploid Miscanthus sinensis

(2012) Xue-Feng Ma et al.   PLoS One

Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach

(2012) Jesse A. Poland et al.   PLoS One

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

High-throughput genotyping in citrus accessions using an SNP genotyping array

(2012) Hiroshi Fujii et al.   Tree Genetics & Genomes

New Insight into the History of Domesticated Apple: Secondary Contribution of the European Wild Apple to the Genome of Cultivated Varieties

(2012) Amandine Cornille et al.   PLoS Genetics

RADSeq: next-generation population genetics

(2011)   Briefings in Functional Genomics

Comparative use of InDel and SSR markers in deciphering the interspecific structure of cultivated citrus genetic diversity: a perspective for genetic association studies

(2011) Andrés García-Lor et al.   MOLECULAR GENETICS AND GENOMICS

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Linkage Mapping and Comparative Genomics Using Next-Generation RAD Sequencing of a Non-Model Organism

(2011) Simon W. Baxter et al.   PLoS One

Genetic structure and domestication history of the grape

(2011) Sean Myles et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One