Saturated linkage map construction in Rubus idaeus using genotyping by sequencing and genome-independent imputation

RAD tag sequencing as a source of SNP markers in Cynara cardunculus L

(2012) Davide Scaglione et al.   BMC GENOMICS

Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array

(2012) Laima Antanaviciute et al.   BMC GENOMICS

Genome-Wide SNP Detection, Validation, and Development of an 8K SNP Array for Apple

(2012) David Chagné et al.   PLoS One

Development and Evaluation of a 9K SNP Array for Peach by Internationally Coordinated SNP Detection and Validation in Breeding Germplasm

(2012) Ignazio Verde et al.   PLoS One

A microsatellite linkage map for the cultivated strawberry (Fragaria × ananassa) suggests extensive regions of homozygosity in the genome that may have resulted from breeding and selection

(2012) D. J. Sargent et al.   THEORETICAL AND APPLIED GENETICS

Construction of black (Rubus occidentalis) and red (R. idaeus) raspberry linkage maps and their comparison to the genomes of strawberry, apple, and peach

(2012) J. M. Bushakra et al.   THEORETICAL AND APPLIED GENETICS

Genome-wide SNP identification by high-throughput sequencing and selective mapping allows sequence assembly positioning using a framework genetic linkage map

(2011) Jean-Marc Celton et al.   BMC BIOLOGY

Identification of SNP and SSR markers in eggplant using RAD tag sequencing

(2011) Lorenzo Barchi et al.   BMC GENOMICS

Construction and application for QTL analysis of a Restriction Site Associated DNA (RAD) linkage map in barley

(2011) Yada Chutimanitsakun et al.   BMC GENOMICS

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Comparison of a high-density genetic linkage map to genome features in the model grass Brachypodium distachyon

(2011) Naxin Huo et al.   THEORETICAL AND APPLIED GENETICS

Mapping with RAD (restriction-site associated DNA) markers to rapidly identify QTL for stem rust resistance in Lolium perenne

(2011) W. F. Pfender et al.   THEORETICAL AND APPLIED GENETICS

Towards an understanding of the nature of resistance to Phytophthora root rot in red raspberry

(2011) J. Graham et al.   THEORETICAL AND APPLIED GENETICS

Genetic diversity of the genus Malus and implications for linkage mapping with SNPs

(2011) Diego Micheletti et al.   Tree Genetics & Genomes

The genome of woodland strawberry (Fragaria vesca)

(2010) Vladimir Shulaev et al.   NATURE GENETICS

The genome of the domesticated apple (Malus × domestica Borkh.)

(2010) Riccardo Velasco et al.   NATURE GENETICS

Rapid Genomic Characterization of the Genus Vitis

(2010) Sean Myles et al.   PLoS One

The genome of the cucumber, Cucumis sativus L.

(2009) Sanwen Huang et al.   NATURE GENETICS

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

SNP high-throughput screening in grapevine using the SNPlex™ genotyping system

(2008) Massimo Pindo et al.   BMC PLANT BIOLOGY

Development of a set of SNP markers present in expressed genes of the apple

(2008) David Chagné et al.   GENOMICS

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

A reference integrated map for cultivated grapevine (Vitis vinifera L.) from three crosses, based on 283 SSR and 501 SNP-based markers

(2008) Silvia Vezzulli et al.   THEORETICAL AND APPLIED GENETICS