Nuclear Species-Diagnostic SNP Markers Mined from 454 Amplicon Sequencing Reveal Admixture Genomic Structure of Modern Citrus Varieties

Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication

(2014) G Albert Wu et al.   NATURE BIOTECHNOLOGY

A Six Nuclear Gene Phylogeny of Citrus (Rutaceae) Taking into Account Hybridization and Lineage Sorting

(2013) Chandrika Ramadugu et al.   PLoS One

Development and Characterization of Genomic and Expressed SSRs in Citrus by Genome-Wide Analysis

(2013) Sheng-Rui Liu et al.   PLoS One

Citrus (Rutaceae) SNP Markers Based on Competitive Allele-Specific PCR; Transferability Across the Aurantioideae Subfamily

(2013) Andres Garcia-Lor et al.   Applications in Plant Sciences

A nuclear phylogenetic analysis: SNPs, indels and SSRs deliver new insights into the relationships in the ‘true citrus fruit trees’ group (Citrinae, Rutaceae) and the origin of cultivated species

(2012) Andres Garcia-Lor et al.   ANNALS OF BOTANY

SNP mining in C. clementina BAC end sequences; transferability in the Citrus genus (Rutaceae), phylogenetic inferences and perspectives for genetic mapping

(2012) Patrick Ollitrault et al.   BMC GENOMICS

A reference genetic map of C. clementina hort. ex Tan.; citrus evolution inferences from comparative mapping

(2012) Patrick Ollitrault et al.   BMC GENOMICS

The draft genome of sweet orange (Citrus sinensis)

(2012) Qiang Xu et al.   NATURE GENETICS

SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects

(2011) Alexis Dereeper et al.   BMC BIOINFORMATICS

Development of genome-wide SNP assays for rice

(2011) Susan R. McCouch et al.   BREEDING SCIENCE

Exploiting BAC-end sequences for the mining, characterization and utility of new short sequences repeat (SSR) markers in Citrus

(2011) Manosh Kumar Biswas et al.   MOLECULAR BIOLOGY REPORTS

Evaluating SNP ascertainment bias and its impact on population assignment in Atlantic cod,Gadus morhua

(2011) IAN R. BRADBURY et al.   Molecular Ecology Resources

Comparative use of InDel and SSR markers in deciphering the interspecific structure of cultivated citrus genetic diversity: a perspective for genetic association studies

(2011) Andrés García-Lor et al.   MOLECULAR GENETICS AND GENOMICS

Analysis of genetic diversity in Citrus

(2011) François Luro et al.   Plant Genetic Resources-Characterization and Utilization

The effect of SNP discovery method and sample size on estimation of population genetic data for Chinese and Indian rhesus macaques (Macaca mulatta)

(2011) Jessica A. Satkoski Trask et al.   PRIMATES

Development of SSR markers from Citrus clementina (Rutaceae) BAC end sequences and interspecific transferability in Citrus

(2010) Frédérique Ollitrault et al.   AMERICAN JOURNAL OF BOTANY

Ascertainment Biases in SNP Chips Affect Measures of Population Divergence

(2010) A. Albrechtsen et al.   MOLECULAR BIOLOGY AND EVOLUTION

New universal mitochondrial PCR markers reveal new information on maternal citrus phylogeny

(2010) Yann Froelicher et al.   Tree Genetics & Genomes

Plant genome sequencing: applications for crop improvement

(2009) David Edwards et al.   PLANT BIOTECHNOLOGY JOURNAL

What phylogeny and gene genealogy analyses reveal about homoplasy in citrus microsatellite alleles

(2009) Noelle A. Barkley et al.   PLANT SYSTEMATICS AND EVOLUTION

Genetic diversity and relationships within Citrus and related genera based on sequence related amplified polymorphism markers (SRAPs)

(2009) A. Uzun et al.   SCIENTIA HORTICULTURAE

Transferability of the EST-SSRs developed on Nules clementine (Citrus clementina Hort ex Tan) to other Citrus species and their effectiveness for genetic mapping

(2008) François L Luro et al.   BMC GENOMICS

A SNP transferability survey within the genus Vitis

(2008) Silvia Vezzulli et al.   BMC PLANT BIOLOGY