Altered nucleocytoplasmic proteome and transcriptome distributions in an in vitro model of amyotrophic lateral sclerosis

Inside out: the role of nucleocytoplasmic transport in ALS and FTLD

(2016) Steven Boeynaems et al.   ACTA NEUROPATHOLOGICA

The C9orf72 repeat expansion disrupts nucleocytoplasmic transport

(2015) Ke Zhang et al.   NATURE

GGGGCC repeat expansion in C9orf72 compromises nucleocytoplasmic transport

(2015) Brian D. Freibaum et al.   NATURE

Modifiers of C9orf72 dipeptide repeat toxicity connect nucleocytoplasmic transport defects to FTD/ALS

(2015) Ana Jovičić et al.   NATURE NEUROSCIENCE

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Mass-spectrometry-based spatial proteomics data analysis using pRoloc and pRolocdata

(2014) L. Gatto et al.   BIOINFORMATICS

Global Phosphoproteomic Analysis of Daphnia pulex Reveals Evolutionary Conservation of Ser/Thr/Tyr Phosphorylation

(2014) Oh Kwang Kwon et al.   JOURNAL OF PROTEOME RESEARCH

Nucleosome assembly is required for nuclear pore complex assembly in mouse zygotes

(2014) Azusa Inoue et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Quantitative proteomics of auditory fear conditioning

(2013) Ingie Hong et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Extensive Mass Spectrometry-based Analysis of the Fission Yeast Proteome

(2013) Jayantha Gunaratne et al.   MOLECULAR & CELLULAR PROTEOMICS

TRiC’s tricks inhibit huntingtin aggregation

(2013) Sarah H Shahmoradian et al.   eLife

Quantitative proteomic analysis reveals that lipopolysaccharide induces mitogen-activated protein kinase-dependent activation in human microglial cells

(2012) Kyunghee Byun et al.   ELECTROPHORESIS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

New insights into nucleosome and chromatin structure: an ordered state or a disordered affair?

(2012) Karolin Luger et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Global proteomics analysis of testis and ovary in adult zebrafish (Danio rerio)

(2011) Ksenia J. Groh et al.   FISH PHYSIOLOGY AND BIOCHEMISTRY

Systematic Comparison of Label-Free, Metabolic Labeling, and Isobaric Chemical Labeling for Quantitative Proteomics on LTQ Orbitrap Velos

(2011) Zhou Li et al.   JOURNAL OF PROTEOME RESEARCH

Deep proteome and transcriptome mapping of a human cancer cell line

(2011) N. Nagaraj et al.   Molecular Systems Biology

TargetMine, an Integrated Data Warehouse for Candidate Gene Prioritisation and Target Discovery

(2011) Yi-An Chen et al.   PLoS One

TDP-43 and FUS: a nuclear affair

(2011) Dorothee Dormann et al.   TRENDS IN NEUROSCIENCES

Nuclear transport impairment of amyotrophic lateral sclerosis-linked mutations in FUS/TLS

(2010) Daisuke Ito et al.   ANNALS OF NEUROLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

YADA: a tool for taking the most out of high-resolution spectra

(2009) Paulo C. Carvalho et al.   BIOINFORMATICS

Mislocalization of TDP-43 in the G93A mutant SOD1 transgenic mouse model of ALS

(2009) Xiaoyang Shan et al.   NEUROSCIENCE LETTERS

Comparative Functional Analysis of the Caenorhabditis elegans and Drosophila melanogaster Proteomes

(2009) Sabine P Schrimpf et al.   PLOS BIOLOGY

DAnTE: a statistical tool for quantitative analysis of -omics data

(2008) A. D. Polpitiya et al.   BIOINFORMATICS

TDP-43 expression in mouse models of amyotrophic lateral sclerosis and spinal muscular atrophy

(2008) Bradley J Turner et al.   BMC NEUROSCIENCE

Amyotrophic lateral sclerosis: Protein chaperone dysfunction revealed by proteomic studies of animal models

(2008) Mohit Raja Jain et al.   Proteomics Clinical Applications