New insights into nucleosome and chromatin structure: an ordered state or a disordered affair?

Visualizing Cell Architecture and Molecular Location Using Soft X-Ray Tomography and Correlated Cryo-Light Microscopy

(2012) Gerry McDermott et al.   Annual Review of Physical Chemistry

Short nucleosome repeats impose rotational modulations on chromatin fibre folding

(2012) Sarah J Correll et al.   EMBO JOURNAL

Human mitotic chromosomes consist predominantly of irregularly folded nucleosome fibres without a 30-nm chromatin structure

(2012) Yoshinori Nishino et al.   EMBO JOURNAL

Nucleosome Structure(s) and Stability: Variations on a Theme

(2011) Andrew J. Andrews et al.   Annual Review of Biophysics

Dynamics of Nucleosomes Assessed with Time-Lapse High-Speed Atomic Force Microscopy

(2011) Atsushi Miyagi et al.   BIOCHEMISTRY

Structure of the H1 C-terminal domain and function in chromatin condensationThis paper is one of a selection of papers published in a Special Issue entitled 31st Annual International Asilomar Chromatin and Chromosomes Conference, and has undergone the Journal’s usual peer review process.

(2011) Tamara L. Caterino et al.   Biochemistry and Cell Biology

High-Resolution Genome-wide Mapping of the Primary Structure of Chromatin

(2011) Zhenhai Zhang et al.   CELL

Global Regulation of H2A.Z Localization by the INO80 Chromatin-Remodeling Enzyme Is Essential for Genome Integrity

(2011) Manolis Papamichos-Chronakis et al.   CELL

Identification of 67 Histone Marks and Histone Lysine Crotonylation as a New Type of Histone Modification

(2011) Minjia Tan et al.   CELL

A Reversible Protection Strategy To Improve Fmoc-SPPS of Peptide Thioesters by the N-Acylurea Approach

(2011) Santosh K. Mahto et al.   CHEMBIOCHEM

Chromatin higher-order structures and gene regulation

(2011) Guohong Li et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Recent advances in single molecule studies of nucleosomes

(2011) Jessica L Killian et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Genome-wide characterization of chromatin binding and nucleosome spacing activity of the nucleosome remodelling ATPase ISWI

(2011) Anna Sala et al.   EMBO JOURNAL

The SWI/SNF complex acts to constrain distribution of the centromeric histone variant Cse4

(2011) Triantaffyllos Gkikopoulos et al.   EMBO JOURNAL

Compaction of chromatin by diverse Polycomb group proteins requires localized regions of high charge

(2011) D. J. Grau et al.   GENES & DEVELOPMENT

The Linker Region of MacroH2A Promotes Self-association of Nucleosomal Arrays

(2011) Uma M. Muthurajan et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Dynamics of Nucleosome Invasion by DNA Binding Proteins

(2011) Hannah S. Tims et al.   JOURNAL OF MOLECULAR BIOLOGY

Identification of a Rapidly Formed Nonnucleosomal Histone-DNA Intermediate that Is Converted into Chromatin by ACF

(2011) Sharon E. Torigoe et al.   MOLECULAR CELL

Chromodomain-Mediated Oligomerization of HP1 Suggests a Nucleosome-Bridging Mechanism for Heterochromatin Assembly

(2011) Daniele Canzio et al.   MOLECULAR CELL

Assembly of Drosophila Centromeric Nucleosomes Requires CID Dimerization

(2011) Weiguo Zhang et al.   MOLECULAR CELL

Crystal structure of the human centromeric nucleosome containing CENP-A

(2011) Hiroaki Tachiwana et al.   NATURE

Histone H2B ubiquitylation disrupts local and higher-order chromatin compaction

(2011) Beat Fierz et al.   Nature Chemical Biology

A unique H2A histone variant occupies the transcriptional start site of active genes

(2011) Tatiana A Soboleva et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Biophysical analysis and small-angle X-ray scattering-derived structures of MeCP2–nucleosome complexes

(2011) Chenghua Yang et al.   NUCLEIC ACIDS RESEARCH

Fluorescence strategies for high-throughput quantification of protein interactions

(2011) Aaron R. Hieb et al.   NUCLEIC ACIDS RESEARCH

Cracking the chromatin code: Precise rule of nucleosome positioning

(2011) Edward N. Trifonov   Physics of Life Reviews

Architecture of the high mobility group nucleosomal protein 2-nucleosome complex as revealed by methyl-based NMR

(2011) H. Kato et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Replacement of histone H3 with CENP-A directs global nucleosome array condensation and loosening of nucleosome superhelical termini

(2011) T. Panchenko et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Histone fold modifications control nucleosome unwrapping and disassembly

(2011) M. Simon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Epigenome characterization at single base-pair resolution

(2011) J. G. Henikoff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural Basis of Silencing: Sir3 BAH Domain in Complex with a Nucleosome at 3.0 A Resolution

(2011) K.-J. Armache et al.   SCIENCE

A Packing Mechanism for Nucleosome Organization Reconstituted Across a Eukaryotic Genome

(2011) Z. Zhang et al.   SCIENCE

Structure and Scm3-mediated assembly of budding yeast centromeric nucleosomes

(2011) Mekonnen Lemma Dechassa et al.   Nature Communications

A RSC/Nucleosome Complex Determines Chromatin Architecture and Facilitates Activator Binding

(2010) Monique Floer et al.   CELL

Stepwise Histone Replacement by SWR1 Requires Dual Activation with Histone H2A.Z and Canonical Nucleosome

(2010) Ed Luk et al.   CELL

Chromatin structure: does the 30-nm fibre exist in vivo?

(2010) Kazuhiro Maeshima et al.   CURRENT OPINION IN CELL BIOLOGY

Nucleosome structural studies

(2010) Song Tan et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Biophysical Characterization of the Centromere-specific Nucleosome from Budding Yeast

(2010) Isabel J. Kingston et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Modeling Studies of Chromatin Fiber Structure as a Function of DNA Linker Length

(2010) Ognjen Perišić et al.   JOURNAL OF MOLECULAR BIOLOGY

SWI/SNF Has Intrinsic Nucleosome Disassembly Activity that Is Dependent on Adjacent Nucleosomes

(2010) Mekonnen Lemma Dechassa et al.   MOLECULAR CELL

The Histone Chaperone Nap1 Promotes Nucleosome Assembly by Eliminating Nonnucleosomal Histone DNA Interactions

(2010) Andrew J. Andrews et al.   MOLECULAR CELL

Structure of RCC1 chromatin factor bound to the nucleosome core particle

(2010) Ravindra D. Makde et al.   NATURE

Nucleosome sequence preferences influence in vivo nucleosome organization

(2010) Noam Kaplan et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

A preoccupied position on nucleosomes

(2010) B Franklin Pugh   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Nucleosome accessibility governed by the dimer/tetramer interface

(2010) Vera Böhm et al.   NUCLEIC ACIDS RESEARCH

The docking domain of histone H2A is required for H1 binding and RSC-mediated nucleosome remodeling

(2010) Manu Shubhdarshan Shukla et al.   NUCLEIC ACIDS RESEARCH

Chromatin particle spectrum analysis: a method for comparative chromatin structure analysis using paired-end mode next-generation DNA sequencing

(2010) N. A. Kent et al.   NUCLEIC ACIDS RESEARCH

The effects of histone H4 tail acetylations on cation-induced chromatin folding and self-association

(2010) Abdollah Allahverdi et al.   NUCLEIC ACIDS RESEARCH

Genome-Wide Kinetics of Nucleosome Turnover Determined by Metabolic Labeling of Histones

(2010) R. B. Deal et al.   SCIENCE

Living without 30nm chromatin fibers

(2010) Eden Fussner et al.   TRENDS IN BIOCHEMICAL SCIENCES

Contribution of histone sequence preferences to nucleosome organization: proposed definitions and methodology

(2010) Noam Kaplan et al.   GENOME BIOLOGY

The Biology of Chromatin Remodeling Complexes

(2009) Cedric R. Clapier et al.   Annual Review of Biochemistry

Intrinsic Promoter Nucleosome Stability/Dynamics Variations Support a Novel Targeting Mechanism

(2009) Laimonas Kelbauskas et al.   BIOCHEMISTRY

NuA4 and SWR1-C: two chromatin-modifying complexes with overlapping functions and componentsThis paper is one of a selection of papers published in this Special Issue, entitled 30th Annual International Asilomar Chromatin and Chromosomes Conference, and has undergone the Journal's usual peer review process.

(2009) Phoebe Y.T. Lu et al.   Biochemistry and Cell Biology

DNA sequence-dependent variation in nucleosome structure, stability, and dynamics detected by a FRET-based analysisThis paper is one of a selection of papers published in this Special Issue, entitled 29th Annual International Asilomar Chromatin and Chromosomes Conference, and has undergone the Journal’s usual peer review process.

(2009) L. Kelbauskas et al.   Biochemistry and Cell Biology

Connection between histone H2A variants and chromatin remodeling complexesThis paper is one of a selection of papers published in this Special Issue, entitled CSBMCB’s 51st Annual Meeting – Epigenetics and Chromatin Dynamics, and has undergone the Journal’s usual peer review process.

(2009) Mohammed Altaf et al.   Biochemistry and Cell Biology

Nucleosome Shape Dictates Chromatin Fiber Structure

(2009) Martin Depken et al.   BIOPHYSICAL JOURNAL

Mitotic Chromosome Structure: Reproducibility of Folding and Symmetry between Sister Chromatids

(2009) Yuri G. Strukov et al.   BIOPHYSICAL JOURNAL

Centromeric Nucleosomes Induce Positive DNA Supercoils

(2009) Takehito Furuyama et al.   CELL

Histone Crosstalk between H3S10ph and H4K16ac Generates a Histone Code that Mediates Transcription Elongation

(2009) Alessio Zippo et al.   CELL

10 Years of Tension on Chromatin: Results from Single Molecule Force Spectroscopy

(2009) Fan-Tso Chien et al.   CURRENT PHARMACEUTICAL BIOTECHNOLOGY

Nucleosome positioning: How is it established, and why does it matter?

(2009) Marta Radman-Livaja et al.   DEVELOPMENTAL BIOLOGY

Histone H3 lysine 4 (H3K4) methylation in development and differentiation

(2009) Joel C. Eissenberg et al.   DEVELOPMENTAL BIOLOGY

Chromatin Remodeling by Imitation Switch (ISWI) Class ATP-dependent Remodelers Is Stimulated by Histone Variant H2A.Z

(2009) Joseph A. Goldman et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Large-scale chromatin structure of inducible genes: transcription on a condensed, linear template

(2009) Yan Hu et al.   JOURNAL OF CELL BIOLOGY

A Method for Genetically Installing Site-Specific Acetylation in Recombinant Histones Defines the Effects of H3 K56 Acetylation

(2009) Heinz Neumann et al.   MOLECULAR CELL

The role of DNA shape in protein–DNA recognition

(2009) Remo Rohs et al.   NATURE

Nucleosome positioning and gene regulation: advances through genomics

(2009) Cizhong Jiang et al.   NATURE REVIEWS GENETICS

Single-molecule force spectroscopy reveals a highly compliant helical folding for the 30-nm chromatin fiber

(2009) Maarten Kruithof et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo

(2009) Yong Zhang et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Evidence for heteromorphic chromatin fibers from analysis of nucleosome interactions

(2009) S. A. Grigoryev et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Nucleosome Family: Dynamic and Growing

(2009) Jordanka Zlatanova et al.   STRUCTURE

Histones: Annotating Chromatin

(2008) Eric I. Campos et al.   Annual Review of Genetics

MacroH2A Allows ATP-Dependent Chromatin Remodeling by SWI/SNF and ACF Complexes but Specifically Reduces Recruitment of SWI/SNF†

(2008) Evelyn Y. Chang et al.   BIOCHEMISTRY

The Effect of Internucleosomal Interaction on Folding of the Chromatin Fiber

(2008) René Stehr et al.   BIOPHYSICAL JOURNAL

Nucleosome Geometry and Internucleosomal Interactions Control the Chromatin Fiber Conformation

(2008) Nick Kepper et al.   BIOPHYSICAL JOURNAL

Molecular mimicry between IL-33 and KSHV for attachment to chromatin through the H2A–H2B acidic pocket

(2008) Lucie Roussel et al.   EMBO REPORTS

Spontaneous Access to DNA Target Sites in Folded Chromatin Fibers

(2008) Michael G. Poirier et al.   JOURNAL OF MOLECULAR BIOLOGY

The DNA-encoded nucleosome organization of a eukaryotic genome

(2008) Noam Kaplan et al.   NATURE

Genetically encoding Nε-acetyllysine in recombinant proteins

(2008) Heinz Neumann et al.   Nature Chemical Biology

The effect of H3K79 dimethylation and H4K20 trimethylation on nucleosome and chromatin structure

(2008) Xu Lu et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

ATP-dependent chromatin remodeling shapes the DNA replication landscape

(2008) Jack A Vincent et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Analysis of cryo-electron microscopy images does not support the existence of 30-nm chromatin fibers in mitotic chromosomes in situ

(2008) M. Eltsov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nucleosome repeat length and linker histone stoichiometry determine chromatin fiber structure

(2008) Andrew Routh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA