Transcriptome Analysis of the Mud Crab (Scylla paramamosain) by 454 Deep Sequencing: Assembly, Annotation, and Marker Discovery

Whole-genome sequence of a flatfish provides insights into ZW sex chromosome evolution and adaptation to a benthic lifestyle

(2014) Songlin Chen et al.   NATURE GENETICS

Parentage assignment of the mud crab (Scylla paramamosain) based on microsatellite markers

(2013) Qunqun Ma et al.   BIOCHEMICAL SYSTEMATICS AND ECOLOGY

Genomics of sablefish (Anoplopoma fimbria): expressed genes, mitochondrial phylogeny, linkage map and identification of a putative sex gene

(2013) Eric B Rondeau et al.   BMC GENOMICS

Transcriptome sequencing and de novo annotation of the critically endangered Adriatic sturgeon

(2013) Michele Vidotto et al.   BMC GENOMICS

The complete mitochondrial genome sequence and gene organization of the mud crab (Scylla paramamosain) with phylogenetic consideration

(2013) Hongyu Ma et al.   GENE

Transcriptome Analysis of Crucian Carp (Carassius auratus), an Important Aquaculture and Hypoxia-Tolerant Species

(2013) Xiaolin Liao et al.   PLoS One

Transcriptome Sequencing and De Novo Analysis of the Copepod Calanus sinicus Using 454 GS FLX

(2013) Juan Ning et al.   PLoS One

A novel myeloid differentiation factor 88 homolog, SpMyD88, exhibiting SpToll-binding activity in the mud crab Scylla paramamosain

(2012) Xin-Cang Li et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Multiplex immune-related genes expression analysis response to bacterial challenge in mud crab, Scylla paramamosain

(2012) Fengying Zhang et al.   FISH & SHELLFISH IMMUNOLOGY

Rapid isolation and characterization of polymorphic microsatellite loci in the mud crab, Scylla paramamosain (Portunidae)

(2012) H.F. Yao et al.   GENETICS AND MOLECULAR RESEARCH

High genetic diversity and low differentiation in mud crab (Scylla paramamosain) along the southeastern coast of China revealed by microsatellite markers

(2012) H. Ma et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Transcriptome Sequencing and Characterization for the Sea Cucumber Apostichopus japonicus (Selenka, 1867)

(2012) Huixia Du et al.   PLoS One

Characterization of Common Carp Transcriptome: Sequencing, De Novo Assembly, Annotation and Comparative Genomics

(2012) Peifeng Ji et al.   PLoS One

SNP Discovery Using Next Generation Transcriptomic Sequencing in Atlantic Herring (Clupea harengus)

(2012) Sarah J. Helyar et al.   PLoS One

Identification of type I microsatellite markers associated with genes and ESTs in Scylla paramamosain

(2011) Hongyu Ma et al.   BIOCHEMICAL SYSTEMATICS AND ECOLOGY

Population genetic diversity of mud crab (Scylla paramamosain) in Hainan Island of China based on mitochondrial DNA

(2011) Hongyu Ma et al.   BIOCHEMICAL SYSTEMATICS AND ECOLOGY

Comparative transcriptome sequencing of germline and somatic tissues of the Ascaris suum gonad

(2011) Xuan Ma et al.   BMC GENOMICS

Transcriptome analysis of orange-spotted grouper (Epinephelus coioides) spleen in response to Singapore grouper iridovirus

(2011) Youhua Huang et al.   BMC GENOMICS

Quantitative gene expression and in situ localization of scygonadin potentially associated with reproductive immunity in tissues of male and female mud crabs, Scylla paramamosain

(2011) Wan-Fang Xu et al.   FISH & SHELLFISH IMMUNOLOGY

Isolation and Characterization of 54 Polymorphic Microsatellite Markers in Scylla paramamosain by FIASCO Approach

(2011) Hongyu Ma et al.   JOURNAL OF THE WORLD AQUACULTURE SOCIETY

A vasa gene from green mud crab Scylla paramamosain and its expression during gonadal development and gametogenesis

(2011) Yilei Wang et al.   MOLECULAR BIOLOGY REPORTS

Transcriptome Sequencing and De Novo Analysis for Yesso Scallop (Patinopecten yessoensis) Using 454 GS FLX

(2011) Rui Hou et al.   PLoS One

Novel Tools for Conservation Genomics: Comparing Two High-Throughput Approaches for SNP Discovery in the Transcriptome of the European Hake

(2011) Ilaria Milano et al.   PLoS One

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

(2010) Thomas L Parchman et al.   BMC GENOMICS

Novel Polymorphic Microsatellite Markers in Scylla paramamosain and Cross-Species Amplification in Related Crab Species

(2010) Hongyu Ma et al.   JOURNAL OF CRUSTACEAN BIOLOGY

Late Pleistocene population expansion of Scylla paramamosain along the coast of China: A population dynamic response to the Last Interglacial sea level highstand

(2010) Lijun He et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx

(2009) Eli Meyer et al.   BMC GENOMICS

Isolation and characterization of ten new polymorphic microsatellite loci in the mud crab, Scylla paramamosain

(2009) Xiao-Jun Xu et al.   CONSERVATION GENETICS

Molecular cloning and characterization of crustin from mud crab Scylla paramamosain

(2008) Chanprapa Imjongjirak et al.   MOLECULAR BIOLOGY REPORTS