Variation of DNA Methylome of Zebrafish Cells under Cold Pressure

ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization

(2015) Guangchuang Yu et al.   BIOINFORMATICS

Stress induced gene expression drives transient DNA methylation changes at adjacent repetitive elements

(2015) David Secco et al.   eLife

DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation

(2015) Manu J Dubin et al.   eLife

Dynamics and Reversibility of the DNA Methylation Landscape of Grapevine Plants (Vitis vinifera) Stressed by In Vitro Cultivation and Thermotherapy

(2015) Miroslav Baránek et al.   PLoS One

Genome-wide data (ChIP-seq) enabled identification of cell wall-related and aquaporin genes as targets of tomato ASR1, a drought stress-responsive transcription factor

(2014) Martiniano M Ricardi et al.   BMC PLANT BIOLOGY

DNA Methylation in an Enhancer Region of the FADS Cluster Is Associated with FADS Activity in Human Liver

(2014) Timothy D. Howard et al.   PLoS One

Transcriptomic characterization of cold acclimation in larval zebrafish

(2013) Yong Long et al.   BMC GENOMICS

Reprogramming the Maternal Zebrafish Genome after Fertilization to Match the Paternal Methylation Pattern

(2013) Magdalena E. Potok et al.   CELL

Sperm, but Not Oocyte, DNA Methylome Is Inherited by Zebrafish Early Embryos

(2013) Lan Jiang et al.   CELL

Mapping the zebrafish brain methylome using reduced representation bisulfite sequencing

(2013) Aniruddha Chatterjee et al.   Epigenetics

The Role of Methylation of DNA in Environmental Adaptation

(2013) K. B. Flores et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Assessing the impact of thermal acclimation on physiological condition in the zebrafish model

(2012) Lucia Vergauwen et al.   JOURNAL OF COMPARATIVE PHYSIOLOGY B-BIOCHEMICAL SYSTEMIC AND ENVIRONMENTAL PHYSIOLOGY

Three Murine Leukemia Virus Integration Regions within 100 Kilobases Upstream of c-myb Are Proximal to the 5' Regulatory Region of the Gene through DNA Looping

(2012) J. Zhang et al.   JOURNAL OF VIROLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Genetic and Non-Genetic Influences during Pregnancy on Infant Global and Site Specific DNA Methylation: Role for Folate Gene Variants and Vitamin B12

(2012) Jill A. McKay et al.   PLoS One

Transcriptomic Characterization of Temperature Stress Responses in Larval Zebrafish

(2012) Yong Long et al.   PLoS One

p53 cooperates with DNA methylation and a suicidal interferon response to maintain epigenetic silencing of repeats and noncoding RNAs

(2012) K. I. Leonova et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Folate and DNA Methylation: A Review of Molecular Mechanisms and the Evidence for Folate's Role

(2012) Krista S. Crider et al.   Advances in Nutrition

Developmental features of DNA methylation during activation of the embryonic zebrafish genome

(2012) Ingrid S Andersen et al.   GENOME BIOLOGY

Epigenetic mechanisms in stress and adaptation

(2011) Karen R. Mifsud et al.   BRAIN BEHAVIOR AND IMMUNITY

Cold exposure down-regulates zebrafish hematopoiesis

(2010) Kasem Kulkeaw et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Thermal biology of zebrafish (Danio rerio)

(2010) J.F. López-Olmeda et al.   JOURNAL OF THERMAL BIOLOGY

Epigenetic Regulation of Repetitive Elements Is Attenuated by Prolonged Heat Stress inArabidopsis

(2010) Ales Pecinka et al.   PLANT CELL

Conservation and divergence of methylation patterning in plants and animals

(2010) S. Feng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation

(2010) A. Zemach et al.   SCIENCE

Stress-Induced Activation of Heterochromatic Transcription

(2010) Mireille Tittel-Elmer et al.   PLoS Genetics

Stochastic epigenetic variation as a driving force of development, evolutionary adaptation, and disease

(2009) A. P. Feinberg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Assessing the Impact of Transgenerational Epigenetic Variation on Complex Traits

(2009) Frank Johannes et al.   PLoS Genetics

Modeling folate, one-carbon metabolism, and DNA methylation

(2008) Cornelia M Ulrich et al.   NUTRITION REVIEWS

Transcriptomic and genomic evolution under constant cold in Antarctic notothenioid fish

(2008) Z. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY