Parallel Mutations Result in a Wide Range of Cooperation and Community Consequences in a Two-Species Bacterial Consortium

Species interactions differ in their genetic robustness

(2015) Lon M. Chubiz et al.   Frontiers in Microbiology

Changing Folding and Binding Stability in a Viral Coat Protein: A Comparison between Substitutions Accessible through Mutation and Those Fixed by Natural Selection

(2014) Craig R. Miller et al.   PLoS One

Importance of positioning for microbial evolution

(2014) W. Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Epistasis and Allele Specificity in the Emergence of a Stable Polymorphism in Escherichia coli

(2014) J. Plucain et al.   SCIENCE

Ex Uno Plures: Clonal Reinforcement Drives Evolution of a Simple Microbial Community

(2014) Margie Kinnersley et al.   PLoS Genetics

Eco-evolutionary feedbacks drive species interactions

(2013) Andrés Andrade-Domínguez et al.   ISME Journal

Development of an Optimized Medium, Strain and High-Throughput Culturing Methods for Methylobacterium extorquens

(2013) Nigel F. Delaney et al.   PLoS One

Impact of the K24N mutation on the transactivation domain of p53 and its binding to murine double-minute clone 2

(2013) Yingqian Ada Zhan et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Can You Sequence Ecology? Metagenomics of Adaptive Diversification

(2013) Christopher J. Marx   PLOS BIOLOGY

Parallel Evolutionary Dynamics of Adaptive Diversification in Escherichia coli

(2013) Matthew D. Herron et al.   PLOS BIOLOGY

Strong inter-population cooperation leads to partner intermixing in microbial communities

(2013) Babak Momeni et al.   eLife

Vaginal Microbiome: Rethinking Health and Disease

(2012) Bing Ma et al.   Annual Review of Microbiology

Microbe–microbe interactions in mixed culture food fermentations

(2012) Eddy J Smid et al.   CURRENT OPINION IN BIOTECHNOLOGY

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

The Molecular Diversity of Adaptive Convergence

(2012) O. Tenaillon et al.   SCIENCE

Optimization of Gene Expression through Divergent Mutational Paths

(2012) Hsin-Hung Chou et al.   Cell Reports

Species Interactions Alter Evolutionary Responses to a Novel Environment

(2012) Diane Lawrence et al.   PLOS BIOLOGY

Integrated Perspective for Effective Bioremediation

(2011) Vasundhara Paliwal et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Parallel bacterial evolution within multiple patients identifies candidate pathogenicity genes

(2011) Tami D Lieberman et al.   NATURE GENETICS

Second-Order Selection for Evolvability in a Large Escherichia coli Population

(2011) R. J. Woods et al.   SCIENCE

Red Queen: from populations to taxa and communities

(2011) Lee Hsiang Liow et al.   TRENDS IN ECOLOGY & EVOLUTION

Rapid evolution of stability and productivity at the origin of a microbial mutualism

(2010) K. L. Hillesland et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Computational estimation of rainbow trout estrogen receptor binding affinities for environmental estrogens

(2010) Conrad Shyu et al.   TOXICOLOGY AND APPLIED PHARMACOLOGY

Short-Term Signatures of Evolutionary Change in the Salmonella enterica Serovar Typhimurium 14028 Genome

(2009) T. Jarvik et al.   JOURNAL OF BACTERIOLOGY

Genome evolution and adaptation in a long-term experiment with Escherichia coli

(2009) Jeffrey E. Barrick et al.   NATURE

13C-based metabolic flux analysis

(2009) Nicola Zamboni et al.   Nature Protocols

The Distribution of Fitness Effects of Beneficial Mutations in Pseudomonas aeruginosa

(2009) R. Craig MacLean et al.   PLoS Genetics

Improved Thermostability and Acetic Acid Tolerance of Escherichia coli via Directed Evolution of Homoserine o-Succinyltransferase

(2008) E. A. Mordukhova et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The SWISS-MODEL Repository and associated resources

(2008) F. Kiefer et al.   NUCLEIC ACIDS RESEARCH