The Complete Female- and Male-Transmitted Mitochondrial Genome of Meretrix lamarckii

The complete mitochondrial DNA of Tegillarca granosa and comparative mitogenomic analyses of three Arcidae species

(2015) Shao'e Sun et al.   GENE

The detection of sex-linked heteroplasmy inPseudocardium sachalinense(Bivalvia: Mactridae) and its implications for the distribution of doubly uniparental inheritance of mitochondrial DNA

(2015) Federico Plazzi   JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH

A Distinct Mitochondrial Genome with DUI-Like Inheritance in the Ocean QuahogArctica islandica

(2015) Cyril Dégletagne et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Expression of a Novel Mitochondrially-Encoded Gene in Gonadic Precursors May Drive Paternal Inheritance of Mitochondria

(2015) Liliana Milani et al.   PLoS One

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Mitochondrial genomes of the Baltic clam Macoma balthica(Bivalvia: Tellinidae): setting the stage for studying mito-nuclear incompatibilities

(2014) Alice Saunier et al.   BMC EVOLUTIONARY BIOLOGY

Evidence for somatic transcription of male-transmitted mitochondrial genome in the DUI species Ruditapes philippinarum (Bivalvia: Veneridae)

(2014) Liliana Milani et al.   CURRENT GENETICS

Does the ORF in the control region of Mytilus mtDNA code for a protein product?

(2014) Eleni Kyriakou et al.   GENE

Paternally Transmitted Mitochondria Express a New Gene of Potential Viral Origin

(2014) Liliana Milani et al.   Genome Biology and Evolution

The quest for Doubly Uniparental Inheritance in heterodont bivalves and its detection inMeretrix lamarckii(Veneridae: Meretricinae)

(2014) Federico Plazzi et al.   JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH

The Inversion of the Control Region in Three Mitogenomes Provides Further Evidence for an Asymmetric Model of Vertebrate mtDNA Replication

(2014) Miguel M. Fonseca et al.   PLoS One

The complete mitochondrial genome of Solemya velum (Mollusca: Bivalvia) and its relationships with Conchifera

(2013) Federico Plazzi et al.   BMC GENOMICS

The largest unassigned regions of the male- and female-transmitted mitochondrial DNAs in Musculista senhousia (Bivalvia Mytilidae)

(2013) Davide Guerra et al.   GENE

Structure, Transcription, and Variability of Metazoan Mitochondrial Genome: Perspectives from an Unusual Mitochondrial Inheritance System

(2013) Fabrizio Ghiselli et al.   Genome Biology and Evolution

Proteomic Analysis of Eggs fromMytilus edulisFemales Differing in Mitochondrial DNA Transmission Mode

(2013) Angel P. Diz et al.   MOLECULAR & CELLULAR PROTEOMICS

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Biparental Inheritance Through Uniparental Transmission: The Doubly Uniparental Inheritance (DUI) of Mitochondrial DNA

(2012) Eleftherios Zouros   Evolutionary Biology

Sex-Linked Mitochondrial Behavior During Early Embryo Development in Ruditapes philippinarum (Bivalvia Veneridae) a Species with the Doubly Uniparental Inheritance (DUI) of Mitochondria

(2012) LILIANA MILANI et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

Heteroplasmy in a deep-sea protobranch bivalve suggests an ancient origin of doubly uniparental inheritance of mitochondria in Bivalvia

(2012) Elizabeth E. Boyle et al.   MARINE BIOLOGY

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

(2012) R. Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

MITOS: Improved de novo metazoan mitochondrial genome annotation

(2012) Matthias Bernt et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Dendroscope 3: An Interactive Tool for Rooted Phylogenetic Trees and Networks

(2012) Daniel H. Huson et al.   SYSTEMATIC BIOLOGY

ViennaRNA Package 2.0

(2011) Ronny Lorenz et al.   Algorithms for Molecular Biology

Mitochondrial genomes and Doubly Uniparental Inheritance: new insights from Musculista senhousia sex-linked mitochondrial DNAs (Bivalvia Mytilidae)

(2011) Marco Passamonti et al.   BMC GENOMICS

Complete mtDNA of the Meretrix lamarckii (Bivalvia: Veneridae) and molecular identification of suspected M. lamarckii based on the whole mitochondrial genome

(2011) Hongxia Wang et al.   Marine Genomics

De Novo Assembly of the Manila Clam Ruditapes philippinarum Transcriptome Provides New Insights into Expression Bias, Mitochondrial Doubly Uniparental Inheritance and Sex Determination

(2011) F. Ghiselli et al.   MOLECULAR BIOLOGY AND EVOLUTION

HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment

(2011) Michael Remmert et al.   NATURE METHODS

T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension

(2011) P. Di Tommaso et al.   NUCLEIC ACIDS RESEARCH

A Molecular Phylogeny of Bivalve Mollusks: Ancient Radiations and Divergences as Revealed by Mitochondrial Genes

(2011) Federico Plazzi et al.   PLoS One

Mitochondrial phylogenomics of the Bivalvia (Mollusca): searching for the origin and mitogenomic correlates of doubly uniparental inheritance of mtDNA

(2010) Hélène Doucet-Beaupré et al.   BMC EVOLUTIONARY BIOLOGY

BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments

(2010) Alexis Criscuolo et al.   BMC EVOLUTIONARY BIOLOGY

Comparative Genomics of Marine Mussels (Mytilus spp.) Gender Associated mtDNA: Rapidly Evolving atp8

(2010) Beata Śmietanka et al.   JOURNAL OF MOLECULAR EVOLUTION

Characterization of a mitochondrial ORF from the gender-associated mtDNAs of Mytilus spp. (Bivalvia: Mytilidae): Identification of the “missing” ATPase 8 gene

(2010) Sophie Breton et al.   Marine Genomics

Novel Protein Genes in Animal mtDNA: A New Sex Determination System in Freshwater Mussels (Bivalvia: Unionoida)?

(2010) Sophie Breton et al.   MOLECULAR BIOLOGY AND EVOLUTION

Strict Sex-Specific mtDNA Segregation in the Germ line of the DUI Species Venerupis philippinarum (Bivalvia: Veneridae)

(2010) F. Ghiselli et al.   MOLECULAR BIOLOGY AND EVOLUTION

Complete mitochondrial DNA sequence and phylogenetic analysis of Zhikong scallop Chlamys farreri (Bivalvia: Pectinidae)

(2010) Kefeng Xu et al.   MOLECULAR BIOLOGY REPORTS

VARNA: Interactive drawing and editing of the RNA secondary structure

(2009) Kévin Darty et al.   BIOINFORMATICS

Doubly Uniparental Inheritance: Two Mitochondrial Genomes, One Precious Model for Organelle DNA Inheritance and Evolution

(2009) Marco Passamonti et al.   DNA AND CELL BIOLOGY

Comparative Mitochondrial Genomics of Freshwater Mussels (Bivalvia: Unionoida) With Doubly Uniparental Inheritance of mtDNA: Gender-Specific Open Reading Frames and Putative Origins of Replication

(2009) Sophie Breton et al.   GENETICS

@TOME-2: a new pipeline for comparative modeling of protein-ligand complexes

(2009) J.-L. Pons et al.   NUCLEIC ACIDS RESEARCH

Phyutility: a phyloinformatics tool for trees, alignments and molecular data

(2008) S. A. Smith et al.   BIOINFORMATICS

GenomeVx: simple web-based creation of editable circular chromosome maps

(2008) G. C. Conant et al.   BIOINFORMATICS

Extreme primary and secondary protein structure variability in the chimeric male-transmitted cytochrome c oxidase subunit II protein in freshwater mussels: Evidence for an elevated amino acid substitution rate in the face of domain-specific purifying selection

(2008) Eric G Chapman et al.   BMC EVOLUTIONARY BIOLOGY

DOUBLY UNIPARENTAL INHERITANCE (DUI) OF MITOCHONDRIAL DNA INDONAX TRUNCULUS(BIVALVIA: DONACIDAE) AND THE PROBLEM OF ITS SPORADIC DETECTION IN BIVALVIA

(2008) Ioannis Theologidis et al.   EVOLUTION

Inverted Replication of Vertebrate Mitochondria

(2008) M. M. Fonseca et al.   MOLECULAR BIOLOGY AND EVOLUTION

An Improved General Amino Acid Replacement Matrix

(2008) S. Q. Le et al.   MOLECULAR BIOLOGY AND EVOLUTION