Using RNA-seq to Profile Gene Expression of Spikelet Development in Response to Temperature and Nitrogen during Meiosis in Rice (Oryza sativa L.)

The mature anther-preferentially expressed genes are associated with pollen fertility, pollen germination and anther dehiscence in rice

(2015) Sheng Ling et al.   BMC GENOMICS

The bHLH142 Transcription Factor Coordinates with TDR1 to Modulate the Expression of EAT1 and Regulate Pollen Development in Rice

(2014) S.-S. Ko et al.   PLANT CELL

OsABCG15 encodes a membrane protein that plays an important role in anther cuticle and pollen exine formation in rice

(2014) Lina Wu et al.   PLANT CELL REPORTS

Reduction of Gibberellin by Low Temperature Disrupts Pollen Development in Rice

(2014) T. Sakata et al.   PLANT PHYSIOLOGY

A Positive Feedback Loop between HEAT SHOCK PROTEIN101 and HEAT STRESS-ASSOCIATED 32-KD PROTEIN Modulates Long-Term Acquired Thermotolerance Illustrating Diverse Heat Stress Responses in Rice Varieties

(2014) M.-y. Lin et al.   PLANT PHYSIOLOGY

Establishing a Regional Nitrogen Management Approach to Mitigate Greenhouse Gas Emission Intensity from Intensive Smallholder Maize Production

(2014) Liang Wu et al.   PLoS One

Determination of Critical Nitrogen Dilution Curve Based on Stem Dry Matter in Rice

(2014) Syed Tahir Ata-Ul-Karim et al.   PLoS One

Rice ORMDL Controls Sphingolipid Homeostasis Affecting Fertility Resulting from Abnormal Pollen Development

(2014) Chutharat Chueasiri et al.   PLoS One

Genome-wide expression analysis of HSP70 family genes in rice and identification of a cytosolic HSP70 gene highly induced under heat stress

(2013) Ki-Hong Jung et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

OsAP65, a rice aspartic protease, is essential for male fertility and plays a role in pollen germination and pollen tube growth

(2013) Jianyan Huang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Coexpression network analysis associated with call of rice seedlings for encountering heat stress

(2013) Neelam K. Sarkar et al.   PLANT MOLECULAR BIOLOGY

Four Heat Shock Protein Genes of the Endoparasitoid Wasp, Cotesia vestalis, and Their Transcriptional Profiles in Relation to Developmental Stages and Temperature

(2013) Min Shi et al.   PLoS One

Global Transcriptional Responses of the Toxic Cyanobacterium, Microcystis aeruginosa, to Nitrogen Stress, Phosphorus Stress, and Growth on Organic Matter

(2013) Matthew J. Harke et al.   PLoS One

Response of Rice Nitrogen Physiology to High Nighttime Temperature during Vegetative Stage

(2013) Song Chen et al.   TheScientificWorldJOURNAL

High temperature injury and auxin biosynthesis in microsporogenesis

(2013) Atsushi Higashitani   Frontiers in Plant Science

Impacts of climate change on paddy rice yield in a temperate climate

(2012) Han-Yong Kim et al.   GLOBAL CHANGE BIOLOGY

Proteomic Analysis Revealed Nitrogen-mediated Metabolic, Developmental, and Hormonal Regulation of Maize (Zea mays L.) Ear Growth

(2012) Chengsong Liao et al.   JOURNAL OF EXPERIMENTAL BOTANY

The evolution, function, structure, and expression of the plant sHSPs

(2012) Elizabeth R. Waters   JOURNAL OF EXPERIMENTAL BOTANY

Effect of elevated CO2 and high temperature on seed-set and grain quality of rice

(2012) P. Madan et al.   JOURNAL OF EXPERIMENTAL BOTANY

Source-sink dynamics and proteomic reprogramming under elevated night temperature and their impact on rice yield and grain quality

(2012) Wanju Shi et al.   NEW PHYTOLOGIST

Expression Profile in Rice Panicle: Insights into Heat Response Mechanism at Reproductive Stage

(2012) Xianwen Zhang et al.   PLoS One

Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems

(2011) S Samuel Yang et al.   BMC GENOMICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Computational methods for transcriptome annotation and quantification using RNA-seq

(2011) Manuel Garber et al.   NATURE METHODS

Pollen Semi-Sterility1Encodes a Kinesin-1–Like Protein Important for Male Meiosis, Anther Dehiscence, and Fertility in Rice

(2011) Shirong Zhou et al.   PLANT CELL

AtHsp70-15-deficient Arabidopsis plants are characterized by reduced growth, a constitutive cytosolic protein response and enhanced resistance to TuMV

(2011) Isabel Jungkunz et al.   PLANT JOURNAL

Climate Trends and Global Crop Production Since 1980

(2011) D. B. Lobell et al.   SCIENCE

A 9 bp cis-element in the promoters of class I small heat shock protein genes on chromosome 3 in rice mediates L-azetidine-2-carboxylic acid and heat shock responses

(2010) Jiahn-Chou Guan et al.   JOURNAL OF EXPERIMENTAL BOTANY

Understanding plant response to nitrogen limitation for the improvement of crop nitrogen use efficiency

(2010) S. Kant et al.   JOURNAL OF EXPERIMENTAL BOTANY

Nitrogen signalling in Arabidopsis: how to obtain insights into a complex signalling network

(2010) L. Castaings et al.   JOURNAL OF EXPERIMENTAL BOTANY

Rice SIZ1, a SUMO E3 ligase, controls spikelet fertility through regulation of anther dehiscence

(2010) Saminathan Thangasamy et al.   NEW PHYTOLOGIST

Functional characterization of the SIZ/PIAS-type SUMO E3 ligases, OsSIZ1 and OsSIZ2 in rice

(2010) HYEONG CHEOL PARK et al.   PLANT CELL AND ENVIRONMENT

Global Gene Profiling of Laser-Captured Pollen Mother Cells Indicates Molecular Pathways and Gene Subfamilies Involved in Rice Meiosis

(2010) X. Tang et al.   PLANT PHYSIOLOGY

High nighttime temperatures affect rice productivity through altered pollen germination and spikelet fertility

(2009) A.R. Mohammed et al.   AGRICULTURAL AND FOREST METEOROLOGY

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

Physiological and molecular changes in Oryza meridionalis Ng., a heat-tolerant species of wild rice

(2009) Andrew P. Scafaro et al.   JOURNAL OF EXPERIMENTAL BOTANY

Physiological and proteomic approaches to address heat tolerance during anthesis in rice (Oryza sativa L.)

(2009) S. V. K. Jagadish et al.   JOURNAL OF EXPERIMENTAL BOTANY

High Temperatures Cause Male Sterility in Rice Plants with Transcriptional Alterations During Pollen Development

(2009) Makoto Endo et al.   PLANT AND CELL PHYSIOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Comprehensive Transcriptome Analysis of Phytohormone Biosynthesis and Signaling Genes in Microspore/Pollen and Tapetum of Rice

(2008) Ko Hirano et al.   PLANT AND CELL PHYSIOLOGY