Transposable Elements: Powerful Contributors to Angiosperm Evolution and Diversity

Transposable element-associated microRNA hairpins produce 21-nt sRNAs integrated into typical microRNA pathways in rice

(2013) Fangqian Ou-Yang et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Comparative Genomic Paleontology across Plant Kingdom Reveals the Dynamics of TE-Driven Genome Evolution

(2013) Moaine El Baidouri et al.   Genome Biology and Evolution

The impact of transposable elements in environmental adaptation

(2013) Elena Casacuberta et al.   MOLECULAR ECOLOGY

The Norway spruce genome sequence and conifer genome evolution

(2013) Björn Nystedt et al.   NATURE

Architecture and evolution of a minute plant genome

(2013) Enrique Ibarra-Laclette et al.   NATURE

Characterization of the LTR retrotransposon repertoire of a plant clade of six diploid and one tetraploid species

(2013) Mathieu Piednoël et al.   PLANT JOURNAL

Transposable Elements: An Abundant and Natural Source of Regulatory Sequences for Host Genes

(2012) Rita Rebollo et al.   Annual Review of Genetics

Slow but not low: genomic comparisons reveal slower evolutionary rate and higher dN/dS in conifers compared to angiosperms

(2012) Emmanuel Buschiazzo et al.   BMC EVOLUTIONARY BIOLOGY

The SLEEPER genes: a transposase-derived angiosperm-specific gene family

(2012) Marijn Knip et al.   BMC PLANT BIOLOGY

Survey Sequencing Reveals Elevated DNA Transposon Activity, Novel Elements, and Variation in Repetitive Landscapes among Vesper Bats

(2012) H. J. T. Pagan et al.   Genome Biology and Evolution

Archaeogenomic Evidence of Punctuated Genome Evolution in Gossypium

(2012) S. A. Palmer et al.   MOLECULAR BIOLOGY AND EVOLUTION

Endogenous viruses: insights into viral evolution and impact on host biology

(2012) Cédric Feschotte et al.   NATURE REVIEWS GENETICS

Ecological and genetic factors linked to contrasting genome dynamics in seed plants

(2012) A. R. Leitch et al.   NEW PHYTOLOGIST

Transposase-Derived Proteins FHY3/FAR1 Interact with PHYTOCHROME-INTERACTING FACTOR1 to Regulate Chlorophyll Biosynthesis by Modulating HEMB1 during Deetiolation in Arabidopsis

(2012) W. Tang et al.   PLANT CELL

Grass MicroRNA Gene Paleohistory Unveils New Insights into Gene Dosage Balance in Subgenome Partitioning after Whole-Genome Duplication

(2012) M. Abrouk et al.   PLANT CELL

Repeatless and Repeat-Based Centromeres in Potato: Implications for Centromere Evolution

(2012) Z. Gong et al.   PLANT CELL

Retrotransposons Control Fruit-Specific, Cold-Dependent Accumulation of Anthocyanins in Blood Oranges

(2012) E. Butelli et al.   PLANT CELL

A mutation in the rice chalcone isomerase gene causes the golden hull and internode 1 phenotype

(2012) Lilan Hong et al.   PLANTA

Transposable Elements Are a Major Cause of Somatic Polymorphism in Vitis vinifera L.

(2012) Grégory Carrier et al.   PLoS One

A Large Insertion in bHLH Transcription Factor BrTT8 Resulting in Yellow Seed Coat in Brassica rapa

(2012) Xia Li et al.   PLoS One

Functional characterization of piggyBat from the bat Myotis lucifugus unveils an active mammalian DNA transposon

(2012) R. Mitra et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A transposable element insertion within ZmGE2 gene is associated with increase in embryo to endosperm ratio in maize

(2012) Pan Zhang et al.   THEORETICAL AND APPLIED GENETICS

Transposable elements and viruses as factors in adaptation and evolution: an expansion and strengthening of the TE-Thrust hypothesis

(2012) Keith R. Oliver et al.   Ecology and Evolution

A Gene Family Derived from Transposable Elements during Early Angiosperm Evolution Has Reproductive Fitness Benefits in Arabidopsis thaliana

(2012) Zoé Joly-Lopez et al.   PLoS Genetics

Gene Expression and Stress Response Mediated by the Epigenetic Regulation of a Transposable Element Small RNA

(2012) Andrea D. McCue et al.   PLoS Genetics

The struggle for life of the genome's selfish architects

(2011) Aurélie Hua-Van et al.   Biology Direct

Evolutionary origins of Brassicaceae specific genes in Arabidopsis thaliana

(2011) Mark TA Donoghue et al.   BMC EVOLUTIONARY BIOLOGY

Gene Capture by Helitron Transposons Reshuffles the Transcriptome of Maize

(2011) A. M. Barbaglia et al.   GENETICS

Miniature Inverted-Repeat Transposable Elements (MITEs) Have Been Accumulated through Amplification Bursts and Play Important Roles in Gene Expression and Species Diversity in Oryza sativa

(2011) C. Lu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Functional analysis of the HS185 regulatory element in the rice HSP70 promoter

(2011) Yu-Man Zhang et al.   MOLECULAR BIOLOGY REPORTS

Ancestral polyploidy in seed plants and angiosperms

(2011) Yuannian Jiao et al.   NATURE

Identification of a functional transposon insertion in the maize domestication gene tb1

(2011) Anthony Studer et al.   NATURE GENETICS

The effects of heat induction and the siRNA biogenesis pathway on the transgenerational transposition of ONSEN, a copia-like retrotransposon in Arabidopsis thaliana

(2011) W. Matsunaga et al.   PLANT AND CELL PHYSIOLOGY

Domestication of Transposable Elements into MicroRNA Genes in Plants

(2011) Yang Li et al.   PLoS One

Pack-Mutator-like transposable elements (Pack-MULEs) induce directional modification of genes through biased insertion and DNA acquisition

(2011) N. Jiang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Recently Formed Polyploid Plants Diversify at Lower Rates

(2011) I. Mayrose et al.   SCIENCE

Characterization of retrotransposon sequences expressed in inflorescences of apomictic and sexual Paspalum notatum plants

(2011) Ana Claudia Ochogavía et al.   SEXUAL PLANT REPRODUCTION

Fire as an evolutionary pressure shaping plant traits

(2011) Jon E. Keeley et al.   TRENDS IN PLANT SCIENCE

A Novel Retrotransposon Inserted in the Dominant Vrn-B1 Allele Confers Spring Growth Habit in Tetraploid Wheat ( Triticum turgidum L.)

(2011) C.-G. Chu et al.   G3-Genes Genomes Genetics

High-Resolution Analysis of Parent-of-Origin Allelic Expression in the Arabidopsis Endosperm

(2011) Philip Wolff et al.   PLoS Genetics

Mobile DNA and the TE-Thrust hypothesis: supporting evidence from the primates

(2011) Keith R Oliver et al.   Mobile DNA

The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences

(2010) Allen Kovach et al.   BMC GENOMICS

Different scales of Ty1/copia-like retrotransposon proliferation in the genomes of three diploid hybrid sunflower species

(2010) T Kawakami et al.   HEREDITY

Unreduced gamete formation in plants: mechanisms and prospects

(2010) L. Brownfield et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome sequencing and analysis of the model grass Brachypodium distachyon

(2010) John P. Vogel et al.   NATURE

VARIATION IN GENOMIC FORM IN PLANTS AND ITS ECOLOGICAL IMPLICATIONS

(2010) MICHAEL D. BENNETT   NEW PHYTOLOGIST

Isolation and characterization of a rice glutathione S-transferase gene promoter regulated by herbicides and hormones

(2010) Tingzhang Hu et al.   PLANT CELL REPORTS

Temperature controls nuclear import of Tam3 transposase in Antirrhinum

(2010) Kaien Fujino et al.   PLANT JOURNAL

Bs1, a New Chimeric Gene Formed by Retrotransposon-Mediated Exon Shuffling in Maize

(2010) N. Elrouby et al.   PLANT PHYSIOLOGY

The Purple Cauliflower Arises from Activation of a MYB Transcription Factor

(2010) L.-W. Chiu et al.   PLANT PHYSIOLOGY

Promiscuous DNA: horizontal transfer of transposable elements and why it matters for eukaryotic evolution

(2010) Sarah Schaack et al.   TRENDS IN ECOLOGY & EVOLUTION

Genome-Wide Patterns of Adaptation to Temperate Environments Associated with Transposable Elements in Drosophila

(2010) Josefa González et al.   PLoS Genetics

Copy Number Variation and Transposable Elements Feature in Recent, Ongoing Adaptation at the Cyp6g1 Locus

(2010) Joshua M. Schmidt et al.   PLoS Genetics

The Role of Hybridization in Plant Speciation

(2009) Pamela S. Soltis et al.   Annual Review of Plant Biology

Transposable elements: powerful facilitators of evolution

(2009) Keith R. Oliver et al.   BIOESSAYS

Transposable elements and an epigenetic basis for punctuated equilibria

(2009) David W. Zeh et al.   BIOESSAYS

Whole genome surveys of rice, maize and sorghum reveal multiple horizontal transfers of the LTR-retrotransposon Route66 in Poaceae

(2009) Anne Roulin et al.   BMC EVOLUTIONARY BIOLOGY

Hypervariable 3′ UTR region of plant LTR-retrotransposons as a source of novel satellite repeats

(2009) Jiří Macas et al.   GENE

Alternative Ac/Ds transposition induces major chromosomal rearrangements in maize

(2009) J. Zhang et al.   GENES & DEVELOPMENT

A New Family of Ty1-copia-Like Retrotransposons Originated in the Tomato Genome by a Recent Horizontal Transfer Event

(2009) X. Cheng et al.   GENETICS

Disruption of Imprinting by Mutator Transposon Insertions in the 5' Proximal Regions of the Zea mays Mez1 Locus

(2009) W. J. Haun et al.   GENETICS

The Contribution of Transposable Elements to Expressed Coding Sequence in Arabidopsis thaliana

(2009) Steven Lockton et al.   JOURNAL OF MOLECULAR EVOLUTION

Adaptive Evolution Involving Gene Duplication and Insertion of a Novel Ty1/copia-Like Retrotransposon in Soybean

(2009) Akira Kanazawa et al.   JOURNAL OF MOLECULAR EVOLUTION

The Sorghum bicolor genome and the diversification of grasses

(2009) Andrew H. Paterson et al.   NATURE

Unexpected consequences of a sudden and massive transposon amplification on rice gene expression

(2009) Ken Naito et al.   NATURE

The evolutionary significance of ancient genome duplications

(2009) Yves Van de Peer et al.   NATURE REVIEWS GENETICS

Rapid structural and epigenetic reorganization near transposable elements in hybrid and allopolyploid genomes in Spartina

(2009) Christian Parisod et al.   NEW PHYTOLOGIST

Impact of transposable elements on the organization and function of allopolyploid genomes

(2009) Christian Parisod et al.   NEW PHYTOLOGIST

The Functional Role of Pack-MULEs in Rice Inferred from Purifying Selection and Expression Profile

(2009) K. Hanada et al.   PLANT CELL

Transposon-induced gene activation as a mechanism generating cluster shape somatic variation in grapevine

(2009) Lucie Fernandez et al.   PLANT JOURNAL

Expression Level of ABERRANT PANICLE ORGANIZATION1 Determines Rice Inflorescence Form through Control of Cell Proliferation in the Meristem

(2009) K. Ikeda-Kawakatsu et al.   PLANT PHYSIOLOGY

The frequency of polyploid speciation in vascular plants

(2009) T. E. Wood et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Distribution, diversity, evolution, and survival of Helitrons in the maize genome

(2009) L. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The polychromatic Helitron landscape of the maize genome

(2009) C. Du et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Extensive Demethylation of Repetitive Elements During Seed Development Underlies Gene Imprinting

(2009) M. Gehring et al.   SCIENCE

Contrasting evolutionary dynamics between angiosperm and mammalian genomes

(2009) Eduard Kejnovsky et al.   TRENDS IN ECOLOGY & EVOLUTION

Origin and Early Evolution of Angiosperms

(2008) Douglas E. Soltis et al.   Annals of the New York Academy of Sciences

The Evolution, Regulation, and Function of Placenta-Specific Genes

(2008) Saara M. Rawn et al.   Annual Review of Cell and Developmental Biology

Transfer of rice mitochondrial ribosomal protein L6 gene to the nucleus: acquisition of the 5'-untranslated region via a transposable element

(2008) Nakao Kubo et al.   BMC EVOLUTIONARY BIOLOGY

Evo-Devo and an Expanding Evolutionary Synthesis: A Genetic Theory of Morphological Evolution

(2008) Sean B. Carroll   CELL

Transposable elements as drivers of genomic and biological diversity in vertebrates

(2008) Astrid Böhne et al.   CHROMOSOME RESEARCH

Multiple waves of recent DNA transposon activity in the bat, Myotis lucifugus

(2008) D. A. Ray et al.   GENOME RESEARCH

Identification of miniature inverted-repeat transposable elements (MITEs) and biogenesis of their siRNAs in the Solanaceae: New functional implications for MITEs

(2008) H. Kuang et al.   GENOME RESEARCH

Envelope-Like Retrotransposons in the Plant Kingdom: Evidence of Their Presence in Gymnosperms (Pinus pinaster)

(2008) Célia Miguel et al.   JOURNAL OF MOLECULAR EVOLUTION

On the Expansion of the Pentatricopeptide Repeat Gene Family in Plants

(2008) N. O'Toole et al.   MOLECULAR BIOLOGY AND EVOLUTION

Horizontal gene transfer in eukaryotic evolution

(2008) Patrick J. Keeling et al.   NATURE REVIEWS GENETICS

Transposable elements and the evolution of regulatory networks

(2008) Cédric Feschotte   NATURE REVIEWS GENETICS

Retrotransposons and siRNA have a role in the evolution of desiccation tolerance leading to resurrection of the plantCraterostigma plantagineum

(2008) Tobias Hilbricht et al.   NEW PHYTOLOGIST

AtCopeg1, the unique gene originated from AtCopia95 retrotransposon family, is sensitive to external hormones and abiotic stresses

(2008) Ke Duan et al.   PLANT CELL REPORTS

Refunctionalization of the ancient rice blast disease resistance genePitby the recruitment of a retrotransposon as a promoter

(2008) Keiko Hayashi et al.   PLANT JOURNAL

Helitron mediated amplification of cytochrome P450 monooxygenase gene in maize

(2008) Natalie Jameson et al.   PLANT MOLECULAR BIOLOGY

A Retrotransposon-Mediated Gene Duplication Underlies Morphological Variation of Tomato Fruit

(2008) H. Xiao et al.   SCIENCE

Small RNA-Directed Epigenetic Natural Variation in Arabidopsis thaliana

(2008) Jixian Zhai et al.   PLoS Genetics

Evolution and Control of Imprinted FWA Genes in the Genus Arabidopsis

(2008) Ryo Fujimoto et al.   PLoS Genetics