Genome-Wide Study of Structural Variants in Bovine Holstein, Montbéliarde and Normande Dairy Breeds

Deleted copy number variation of Hanwoo and Holstein using next generation sequencing at the population level

(2014) Dong-Hyun Shin et al.   BMC GENOMICS

Genome wide CNV analysis reveals additional variants associated with milk production traits in Holsteins

(2014) Lingyang Xu et al.   BMC GENOMICS

Detection of copy number variations and their effects in Chinese bulls

(2014) Liangzhi Zhang et al.   BMC GENOMICS

A genome-wide survey reveals a deletion polymorphism associated with resistance to gastrointestinal nematodes in Angus cattle

(2014) Lingyang Xu et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Deciphering the Genetic Blueprint behind Holstein Milk Proteins and Production

(2014) Hyun-Jeong Lee et al.   Genome Biology and Evolution

Deletion on chromosome 5 associated with decreased reproductive efficiency in female cattle1,2,3,4

(2014) T. G. McDaneld et al.   JOURNAL OF ANIMAL SCIENCE

Sequencing and annotated analysis of full genome of Holstein breed bull

(2014) Sulev Kõks et al.   MAMMALIAN GENOME

Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle

(2014) Hans D Daetwyler et al.   NATURE GENETICS

Independent Polled Mutations Leading to Complex Gene Expression Differences in Cattle

(2014) Natalie Wiedemar et al.   PLoS One

Whole-Genome Analyses of Korean Native and Holstein Cattle Breeds by Massively Parallel Sequencing

(2014) Jung-Woo Choi et al.   PLoS One

A 660-Kb Deletion with Antagonistic Effects on Fertility and Milk Production Segregates at High Frequency in Nordic Red Cattle: Additional Evidence for the Common Occurrence of Balancing Selection in Livestock

(2014) Naveen Kumar Kadri et al.   PLoS Genetics

Massive screening of copy number population-scale variation in Bos taurus genome

(2013) Francesco Cicconardi et al.   BMC GENOMICS

Assessment of the genomic variation in a cattle population by re-sequencing of key animals at low to medium coverage

(2013) Sandra Jansen et al.   BMC GENOMICS

Genome-wide detection of copy number variations using high-density SNP genotyping platforms in Holsteins

(2013) Li Jiang et al.   BMC GENOMICS

Whole genome sequencing of Gir cattle for identifying polymorphisms and loci under selection

(2013) Xiaoping Liao et al.   GENOME

Abundant sequence divergence in the native Japanese cattle Mishima-Ushi ( Bos taurus ) detected using whole-genome sequencing

(2013) Kaoru Tsuda et al.   GENOMICS

Genome-wide copy number variation in Hanwoo, Black Angus, and Holstein cattle

(2013) Jung-Woo Choi et al.   MAMMALIAN GENOME

Fine Mapping for Weaver Syndrome in Brown Swiss Cattle and the Identification of 41 Concordant Mutations across NRCAM, PNPLA8 and CTTNBP2

(2013) Matthew McClure et al.   PLoS One

Identification of a Nonsense Mutation in CWC15 Associated with Decreased Reproductive Efficiency in Jersey Cattle

(2013) Tad S. Sonstegard et al.   PLoS One

A Single Nucleotide Polymorphism within the Interferon Gamma Receptor 2 Gene Perfectly Coincides with Polledness in Holstein Cattle

(2013) Sabrina Glatzer et al.   PLoS One

Novel Insights into the Bovine Polled Phenotype and Horn Ontogenesis in Bovidae

(2013) Aurélie Allais-Bonnet et al.   PLoS One

Detection of Haplotypes Associated with Prenatal Death in Dairy Cattle and Identification of Deleterious Mutations in GART, SHBG and SLC37A2

(2013) Sébastien Fritz et al.   PLoS One

Ectopic KIT Copy Number Variation Underlies Impaired Migration of Primordial Germ Cells Associated with Gonadal Hypoplasia in Cattle (Bos taurus)

(2013) Heli Venhoranta et al.   PLoS One

A Non-Coding Genomic Duplication at the HMX1 Locus Is Associated with Crop Ears in Highland Cattle

(2013) Caroline Tina Koch et al.   PLoS One

Fine mapping of copy number variations on two cattle genome assemblies using high density SNP array

(2012) Yali Hou et al.   BMC GENOMICS

Analysis of copy number variations in Holstein cows identify potential mechanisms contributing to differences in residual feed intake

(2012) Yali Hou et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Copy number variation of individual cattle genomes using next-generation sequencing

(2012) D. M. Bickhart et al.   GENOME RESEARCH

Genome Sequence and Assembly of Bos indicus

(2012) F. C. Canavez et al.   JOURNAL OF HEREDITY

Serial translocation by means of circular intermediates underlies colour sidedness in cattle

(2012) Keith Durkin et al.   NATURE

Design of a Bovine Low-Density SNP Array Optimized for Imputation

(2012) Didier Boichard et al.   PLoS One

Genome-Wide Identification of Copy Number Variations in Chinese Holstein

(2012) Li Jiang et al.   PLoS One

A 3.7 Mb Deletion Encompassing ZEB2 Causes a Novel Polled and Multisystemic Syndrome in the Progeny of a Somatic Mosaic Bull

(2012) Aurélien Capitan et al.   PLoS One

Whole-genome resequencing of two elite sires for the detection of haplotypes under selection in dairy cattle

(2012) D. M. Larkin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Next generation sequencing of African and Indicine cattle to identify single nucleotide polymorphisms

(2012) W. Barris et al.   Animal Production Science

Global assessment of genomic variation in cattle by genome resequencing and high-throughput genotyping

(2011) Bujie Zhan et al.   BMC GENOMICS

Whole genome resequencing of black Angus and Holstein cattle for SNP and CNV discovery

(2011) Paul Stothard et al.   BMC GENOMICS

Genomic characteristics of cattle copy number variations

(2011) Yali Hou et al.   BMC GENOMICS

Whole-genome resequencing shows numerous genes with nonsynonymous SNPs in the Japanese native cattle Kuchinoshima-Ushi

(2011) Ryouka Kawahara-Miki et al.   BMC GENOMICS

Genomic regions showing copy number variations associate with resistance or susceptibility to gastrointestinal nematodes in Angus cattle

(2011) Yali Hou et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Analysis of copy number variants in the cattle genome

(2011) James W. Kijas et al.   GENE

Mapping copy number variation by population-scale genome sequencing

(2011) Ryan E. Mills et al.   NATURE

Genome structural variation discovery and genotyping

(2011) Can Alkan et al.   NATURE REVIEWS GENETICS

A deletion mutation in bovine SLC4A2 is associated with osteopetrosis in Red Angus cattle

(2010) Stacey N Meyers et al.   BMC GENOMICS

Analysis of copy loss and gain variations in Holstein cattle autosomes using BeadChip SNPs

(2010) Eyal Seroussi et al.   BMC GENOMICS

Copy number variation in the bovine genome

(2010) João Fadista et al.   BMC GENOMICS

Identification of copy number variations and common deletion polymorphisms in cattle

(2010) Joon Bae et al.   BMC GENOMICS

Analysis of copy number variations among diverse cattle breeds

(2010) G. E. Liu et al.   GENOME RESEARCH

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Initial analysis of copy number variations in cattle selected for resistance or susceptibility to intestinal nematodes

(2010) George E. Liu et al.   MAMMALIAN GENOME

Integrating common and rare genetic variation in diverse human populations

(2010)   NATURE

Insights into the Genetic History of French Cattle from Dense SNP Data on 47 Worldwide Breeds

(2010) Mathieu Gautier et al.   PLoS One

A Novel Mutation in the Maternally Imprinted PEG3 Domain Results in a Loss of MIMT1 Expression and Causes Abortions and Stillbirths in Cattle (Bos taurus)

(2010) Krzysztof Flisikowski et al.   PLoS One

Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads

(2009) K. Ye et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Analysis of recent segmental duplications in the bovine genome

(2009) George E Liu et al.   BMC GENOMICS

Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding

(2009) K. J. McKernan et al.   GENOME RESEARCH

Development and Characterization of a High Density SNP Genotyping Assay for Cattle

(2009) Lakshmi K. Matukumalli et al.   PLoS One

Repertoire of Bovine miRNA and miRNA-Like Small Regulatory RNAs Expressed upon Viral Infection

(2009) Evgeny A. Glazov et al.   PLoS One

Human Genome Sequencing Using Unchained Base Reads on Self-Assembling DNA Nanoarrays

(2009) R. Drmanac et al.   SCIENCE

Whole genome sequencing of a single Bos taurus animal for single nucleotide polymorphism discovery

(2009) Sebastian H Eck et al.   GENOME BIOLOGY

A whole-genome assembly of the domestic cow, Bos taurus

(2009) Aleksey V Zimin et al.   GENOME BIOLOGY

Structural Variation of Chromosomes in Autism Spectrum Disorder

(2008) Christian R. Marshall et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Rare chromosomal deletions and duplications increase risk of schizophrenia

(2008) Jennifer L. Stone et al.   NATURE

Large recurrent microdeletions associated with schizophrenia

(2008) Hreinn Stefansson et al.   NATURE

Accurate whole human genome sequencing using reversible terminator chemistry

(2008) David R. Bentley et al.   NATURE

Association between Microdeletion and Microduplication at 16p11.2 and Autism

(2008) Lauren A. Weiss et al.   NEW ENGLAND JOURNAL OF MEDICINE

Rare Structural Variants Disrupt Multiple Genes in Neurodevelopmental Pathways in Schizophrenia

(2008) T. Walsh et al.   SCIENCE

Single-Molecule DNA Sequencing of a Viral Genome

(2008) T. D. Harris et al.   SCIENCE