Whole-Genome Analyses of Korean Native and Holstein Cattle Breeds by Massively Parallel Sequencing

Whole-genome resequencing of Hanwoo (Korean cattle) and insight into regions of homozygosity

(2013) Kyung-Tai Lee et al.   BMC GENOMICS

Genome-wide copy number variation in Hanwoo, Black Angus, and Holstein cattle

(2013) Jung-Woo Choi et al.   MAMMALIAN GENOME

Massively parallel sequencing of Chikso (Korean brindle cattle) to discover genome-wide SNPs and InDels

(2013) Jung-Woo Choi et al.   MOLECULES AND CELLS

Effect of Population Reduction on mtDNA Diversity and Demographic History of Korean Cattle Populations

(2012) Hailu Dadi et al.   ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES

Fine mapping of copy number variations on two cattle genome assemblies using high density SNP array

(2012) Yali Hou et al.   BMC GENOMICS

Copy number variation of individual cattle genomes using next-generation sequencing

(2012) D. M. Bickhart et al.   GENOME RESEARCH

An integrated map of genetic variation from 1,092 human genomes

(2012)   NATURE

Update on activities at the Universal Protein Resource (UniProt) in 2013

(2012)   NUCLEIC ACIDS RESEARCH

Genome-Wide Identification of Copy Number Variations in Chinese Holstein

(2012) Li Jiang et al.   PLoS One

In-depth annotation of SNPs arising from resequencing projects using NGS-SNP

(2011) J. R. Grant et al.   BIOINFORMATICS

Whole genome resequencing of black Angus and Holstein cattle for SNP and CNV discovery

(2011) Paul Stothard et al.   BMC GENOMICS

Genomic characteristics of cattle copy number variations

(2011) Yali Hou et al.   BMC GENOMICS

Application of site and haplotype-frequency based approaches for detecting selection signatures in cattle

(2011) Saber Qanbari et al.   BMC GENOMICS

Whole-genome resequencing shows numerous genes with nonsynonymous SNPs in the Japanese native cattle Kuchinoshima-Ushi

(2011) Ryouka Kawahara-Miki et al.   BMC GENOMICS

Genome-wide association studies for feedlot and growth traits in cattle1

(2011) S. Bolormaa et al.   JOURNAL OF ANIMAL SCIENCE

Database resources of the National Center for Biotechnology Information

(2011) E. W. Sayers et al.   NUCLEIC ACIDS RESEARCH

Ensembl 2012

(2011) P. Flicek et al.   NUCLEIC ACIDS RESEARCH

Nitric oxide triggers mammary gland involution after weaning: remodelling is delayed but not impaired in mice lacking inducible nitric oxide synthase

(2010) Rosa Zaragozá et al.   BIOCHEMICAL JOURNAL

Identification of copy number variations and common deletion polymorphisms in cattle

(2010) Joon Bae et al.   BMC GENOMICS

Analysis of copy number variations among diverse cattle breeds

(2010) G. E. Liu et al.   GENOME RESEARCH

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Whole-genome sequencing and comprehensive variant analysis of a Japanese individual using massively parallel sequencing

(2010) Akihiro Fujimoto et al.   NATURE GENETICS

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

Genome Wide Association Studies for Milk Production Traits in Chinese Holstein Population

(2010) Li Jiang et al.   PLoS One

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

CNV-seq, a new method to detect copy number variation using high-throughput sequencing

(2009) Chao Xie et al.   BMC BIOINFORMATICS

Genome wide signatures of positive selection: The comparison of independent samples and the identification of regions associated to traits

(2009) William Barendse et al.   BMC GENOMICS

A whole genome scan to map QTL for milk production traits and somatic cell score in Canadian Holstein bulls

(2009) D. Kolbehdari et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Whole genome single nucleotide polymorphism associations with feed intake and feed efficiency in beef cattle1

(2009) E. L. Sherman et al.   JOURNAL OF ANIMAL SCIENCE

Ruminal and abomasal starch hydrolysate infusions selectively decrease the expression of cationic amino acid transporter mRNA by small intestinal epithelia of forage-fed beef steers

(2009) S.F. Liao et al.   JOURNAL OF DAIRY SCIENCE

BioMart Central Portal—unified access to biological data

(2009) Syed Haider et al.   NUCLEIC ACIDS RESEARCH

Development and Characterization of a High Density SNP Genotyping Assay for Cattle

(2009) Lakshmi K. Matukumalli et al.   PLoS One

The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution

(2009) et al.   SCIENCE

Genome-Wide Survey of SNP Variation Uncovers the Genetic Structure of Cattle Breeds

(2009) et al.   SCIENCE

Whole genome sequencing of a single Bos taurus animal for single nucleotide polymorphism discovery

(2009) Sebastian H Eck et al.   GENOME BIOLOGY

A whole-genome assembly of the domestic cow, Bos taurus

(2009) Aleksey V Zimin et al.   GENOME BIOLOGY

Prolactin Regulation of Mammary Gland Development

(2008) Samantha R. Oakes et al.   JOURNAL OF MAMMARY GLAND BIOLOGY AND NEOPLASIA