Global assessment of genomic variation in cattle by genome resequencing and high-throughput genotyping
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Title
Global assessment of genomic variation in cattle by genome resequencing and high-throughput genotyping
Authors
Keywords
-
Journal
BMC GENOMICS
Volume 12, Issue 1, Pages -
Publisher
Springer Nature
Online
2011-11-16
DOI
10.1186/1471-2164-12-557
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Note: Only part of the references are listed.- An atlas of bovine gene expression reveals novel distinctive tissue characteristics and evidence for improving genome annotation
- (2012) Gregory P Harhay et al. GENOME BIOLOGY
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- (2011) H. Li BIOINFORMATICS
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- (2011) Yali Hou et al. BMC GENOMICS
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- (2010) M. Pérez-Enciso et al. ANIMAL GENETICS
- Structural Variation in the Human Genome and its Role in Disease
- (2010) Paweł Stankiewicz et al. Annual Review of Medicine
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- (2010) A. Ritz et al. BIOINFORMATICS
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
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- (2010) Eyal Seroussi et al. BMC GENOMICS
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- (2010) João Fadista et al. BMC GENOMICS
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- (2010) Joon Bae et al. BMC GENOMICS
- Accurate Prediction of Genetic Values for Complex Traits by Whole-Genome Resequencing
- (2010) T. Meuwissen et al. GENETICS
- Analysis of copy number variations among diverse cattle breeds
- (2010) G. E. Liu et al. GENOME RESEARCH
- Genome-wide mapping and assembly of structural variant breakpoints in the mouse genome
- (2010) A. R. Quinlan et al. GENOME RESEARCH
- Dindel: Accurate indel calls from short-read data
- (2010) C. A. Albers et al. GENOME RESEARCH
- Complete Khoisan and Bantu genomes from southern Africa
- (2010) Stephan C. Schuster et al. NATURE
- A map of human genome variation from population-scale sequencing
- (2010) Richard M. Durbin et al. NATURE
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- (2010) Hansoo Park et al. NATURE GENETICS
- Whole-Genome Sequencing in a Patient with Charcot–Marie–Tooth Neuropathy
- (2010) James R. Lupski et al. NEW ENGLAND JOURNAL OF MEDICINE
- Reference-unbiased copy number variant analysis using CGH microarrays
- (2010) Young Seok Ju et al. NUCLEIC ACIDS RESEARCH
- Genomic Runs of Homozygosity Record Population History and Consanguinity
- (2010) Mirna Kirin et al. PLoS One
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- (2010) Kimberly Pelak et al. PLoS Genetics
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- (2010) Young Seok Ju et al. GENOME BIOLOGY
- Sequencing and analysis of an Irish human genome
- (2010) Pin Tong et al. GENOME BIOLOGY
- Towards a comprehensive structural variation map of an individual human genome
- (2010) Andy W Pang et al. GENOME BIOLOGY
- Copy Number Variation in Human Health, Disease, and Evolution
- (2009) Feng Zhang et al. Annual Review of Genomics and Human Genetics
- Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads
- (2009) K. Ye et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- CNV-seq, a new method to detect copy number variation using high-throughput sequencing
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- (2009) Ross L Tellam et al. BMC GENOMICS
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- (2009) S.-M. Ahn et al. GENOME RESEARCH
- Common polymorphic transcript variation in human disease
- (2009) H. B. Fraser et al. GENOME RESEARCH
- Sensitive and accurate detection of copy number variants using read depth of coverage
- (2009) S. Yoon et al. GENOME RESEARCH
- Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding
- (2009) K. J. McKernan et al. GENOME RESEARCH
- Breakpoint regions and homologous synteny blocks in chromosomes have different evolutionary histories
- (2009) D. M. Larkin et al. GENOME RESEARCH
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- (2009) Donald F. Conrad et al. NATURE
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- (2009) NATURE BIOTECHNOLOGY
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- (2009) Dmitry Pushkarev et al. NATURE BIOTECHNOLOGY
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- (2009) Can Alkan et al. NATURE GENETICS
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- (2009) Michael L. Metzker NATURE REVIEWS GENETICS
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- (2009) Lakshmi K. Matukumalli et al. PLoS One
- Potential etiologic and functional implications of genome-wide association loci for human diseases and traits
- (2009) L. A. Hindorff et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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