Genomic Comparison of the Closely-Related Salmonella enterica Serovars Enteritidis, Dublin and Gallinarum

Evolutionary Genomics of Salmonella enterica Subspecies

(2013) P. T. Desai et al.   mBio

Characterization of the ELPhiS Prophage from Salmonella enterica Serovar Enteritidis Strain LK5

(2012) L. Farris Hanna et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Salmonella Transcriptome in Lettuce and Cilantro Soft Rot Reveals a Niche Overlap with the Animal Host Intestine

(2012) Danielle M. Goudeau et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies

(2012) Sajia Akhter et al.   NUCLEIC ACIDS RESEARCH

A Rab32-Dependent Pathway Contributes to Salmonella Typhi Host Restriction

(2012) S. Spano et al.   SCIENCE

Efficacy of Bacteriophage Therapy on Horizontal Transmission of Salmonella Gallinarum on Commercial Layer Chickens

(2011) Tae-Hyun Lim et al.   AVIAN DISEASES

Improving pan-genome annotation using whole genome multiple alignment

(2011) Samuel V Angiuoli et al.   BMC BIOINFORMATICS

Experimental annotation of post-translational features and translated coding regions in the pathogen Salmonella Typhimurium

(2011) Charles Ansong et al.   BMC GENOMICS

Salmonella enterica Serovar Typhimurium Colonizing the Lumen of the Chicken Intestine Grows Slowly and Upregulates a Unique Set of Virulence and Metabolism Genes

(2011) P. C. Harvey et al.   INFECTION AND IMMUNITY

Comparative Genomics of 28 Salmonella enterica Isolates: Evidence for CRISPR-Mediated Adaptive Sublineage Evolution

(2011) W. F. Fricke et al.   JOURNAL OF BACTERIOLOGY

Genome Sequences of Salmonella enterica Serovar Typhimurium, Choleraesuis, Dublin, and Gallinarum Strains of Well- Defined Virulence in Food-Producing Animals

(2011) E. J. Richardson et al.   JOURNAL OF BACTERIOLOGY

Intestinal inflammation allows Salmonella to use ethanolamine to compete with the microbiota

(2011) P. Thiennimitr et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chromosomal Rearrangements in Salmonella enterica Serovar Typhi Strains Isolated from Asymptomatic Human Carriers

(2011) T. D. Matthews et al.   mBio

Ethanolamine Utilization Contributes to Proliferation ofSalmonella entericaSerovar Typhimurium in Food and in Nematodes

(2010) Shabarinath Srikumar et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

S. Typhimurium sseJ gene decreases the S. Typhi cytotoxicity toward cultured epithelial cells

(2010) A Nicole Trombert et al.   BMC MICROBIOLOGY

Using comparative genome analysis to identify problems in annotated microbial genomes

(2010) M. S. Poptsova et al.   MICROBIOLOGY-SGM

Gut inflammation provides a respiratory electron acceptor for Salmonella

(2010) Sebastian E. Winter et al.   NATURE

GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes

(2010) Amrita Pati et al.   NATURE METHODS

Modified Intracellular-Associated Phenotypes in a Recombinant Salmonella Typhi Expressing S. Typhimurium SPI-3 Sequences

(2010) Patricio Retamal et al.   PLoS One

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

Chromosomal Rearrangements Formed by rrn Recombination Do Not Improve Replichore Balance in Host-Specific Salmonella enterica Serovars

(2010) T. David Matthews et al.   PLoS One

Pseudogene accumulation in the evolutionary histories of Salmonella enterica serovars Paratyphi A and Typhi

(2009) Kathryn E Holt et al.   BMC GENOMICS

Genomic and phenotypic variation in epidemic-spanning Salmonella enterica serovar Enteritidis isolates

(2009) Laura Betancor et al.   BMC MICROBIOLOGY

Short-Term Signatures of Evolutionary Change in the Salmonella enterica Serovar Typhimurium 14028 Genome

(2009) T. Jarvik et al.   JOURNAL OF BACTERIOLOGY

Evaluation of Three Automated Genome Annotations for Halorhabdus utahensis

(2009) Peter Bakke et al.   PLoS One

Supplement 2003–2007 (No. 47) to the White-Kauffmann-Le Minor scheme

(2009) Martine Guibourdenche et al.   RESEARCH IN MICROBIOLOGY

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Comparative genome analysis of Salmonella Enteritidis PT4 and Salmonella Gallinarum 287/91 provides insights into evolutionary and host adaptation pathways

(2008) N. R. Thomson et al.   GENOME RESEARCH

High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi

(2008) Kathryn E Holt et al.   NATURE GENETICS

Gastrointestinal microbial ecology and the safety of our food supply as related to Salmonella1,2

(2007) T. R. Callaway et al.   JOURNAL OF ANIMAL SCIENCE