Experimental annotation of post-translational features and translated coding regions in the pathogen Salmonella Typhimurium

A metabolomics and proteomics study of the adaptation of Staphylococcus aureus to glucose starvation

(2011) Manuel Liebeke et al.   Molecular BioSystems

Computational Prediction and Experimental Validation of Signal Peptide Cleavages in the Extracellular Proteome of a Natural Microbial Community

(2010) Brian K. Erickson et al.   JOURNAL OF PROTEOME RESEARCH

A comprehensive assessment of N-terminal signal peptides prediction methods

(2009) Khar Choo et al.   BMC BIOINFORMATICS

Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data

(2009) Navdeep Jaitly et al.   BMC BIOINFORMATICS

Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger

(2009) James C Wright et al.   BMC GENOMICS

A perfect genome annotation is within reach with the proteomics and genomics alliance

(2009) Jean Armengaud   CURRENT OPINION IN MICROBIOLOGY

Proteomic discovery of previously unannotated, rapidly evolving seminal fluid genes in Drosophila

(2009) G. D. Findlay et al.   GENOME RESEARCH

Short-Term Signatures of Evolutionary Change in the Salmonella enterica Serovar Typhimurium 14028 Genome

(2009) T. Jarvik et al.   JOURNAL OF BACTERIOLOGY

B. subtilisRibosomal Proteins: Structural Homology and Post-Translational Modifications

(2009) Matthew A. Lauber et al.   JOURNAL OF PROTEOME RESEARCH

Global Proteome Analysis ofLeptospira interrogans

(2009) Azad Eshghi et al.   JOURNAL OF PROTEOME RESEARCH

Global Systems-Level Analysis of Hfq and SmpB Deletion Mutants in Salmonella: Implications for Virulence and Global Protein Translation

(2009) Charles Ansong et al.   PLoS One

Proteomic Detection of Non-Annotated Protein-Coding Genes in Pseudomonas fluorescens Pf0-1

(2009) Wook Kim et al.   PLoS One

Alliance of Proteomics and Genomics to Unravel the Specificities of Sahara Bacterium Deinococcus deserti

(2009) Arjan de Groot et al.   PLoS Genetics

Coordinated Regulation of Virulence during Systemic Infection of Salmonella enterica Serovar Typhimurium

(2009) Hyunjin Yoon et al.   PLoS Pathogens

Inhibitors of FabI, an Enzyme Drug Target in the Bacterial Fatty Acid Biosynthesis Pathway

(2008) Hao Lu et al.   ACCOUNTS OF CHEMICAL RESEARCH

Proteome-Wide Identification of Proteins and Their Modifications with Decreased Ambiguities and Improved False Discovery Rates Using Unique Sequence Tags

(2008) Yufeng Shen et al.   ANALYTICAL CHEMISTRY

De Novo Sequencing of Unique Sequence Tags for Discovery of Post-Translational Modifications of Proteins

(2008) Yufeng Shen et al.   ANALYTICAL CHEMISTRY

Use of shotgun proteomics for the identification, confirmation, and correction of C. elegans gene annotations

(2008) G. E. Merrihew et al.   GENOME RESEARCH

Comparative proteogenomics: Combining mass spectrometry and comparative genomics to analyze multiple genomes

(2008) N. Gupta et al.   GENOME RESEARCH

Discovery and revision of Arabidopsis genes by proteogenomics

(2008) N. E. Castellana et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deep Sequencing Analysis of Small Noncoding RNA and mRNA Targets of the Global Post-Transcriptional Regulator, Hfq

(2008) Alexandra Sittka et al.   PLoS Genetics