Integrated Exon Level Expression Analysis of Driver Genes Explain Their Role in Colorectal Cancer

Identification of chromosomal copy number variations and novel candidate loci in hereditary nonpolyposis colorectal cancer with mismatch repair proficiency

(2013) Weixiang Chen et al.   GENOMICS

Targeted Deletion of the Metastasis-Associated Phosphatase Ptp4a3 (PRL-3) Suppresses Murine Colon Cancer

(2013) Mark W. Zimmerman et al.   PLoS One

Novel Genes Associated with Colorectal Cancer Are Revealed by High Resolution Cytogenetic Analysis in a Patient Specific Manner

(2013) Hisham Eldai et al.   PLoS One

Simultaneously extracting DNA, RNA, and protein using kits: Is sample quantity or quality prejudiced?

(2012) William Mathieson et al.   ANALYTICAL BIOCHEMISTRY

BEAT: Bioinformatics Exon Array Tool to store, analyze and visualize Affymetrix GeneChip Human Exon Array data from disease experiments

(2012) Arianna Consiglio et al.   BMC BIOINFORMATICS

Cancer gene prioritization by integrative analysis of mRNA expression and DNA copy number data: a comparative review

(2012) L. Lahti et al.   BRIEFINGS IN BIOINFORMATICS

The expression of leucine-rich repeat gene family members in colorectal cancer

(2012) Ada Piepoli et al.   EXPERIMENTAL BIOLOGY AND MEDICINE

An integrated approach to identify causal network modules of complex diseases with application to colorectal cancer

(2012) Zhenshu Wen et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Comparative analysis of algorithms for integration of copy number and expression data

(2012) Riku Louhimo et al.   NATURE METHODS

Wisdom of crowds for robust gene network inference

(2012) Daniel Marbach et al.   NATURE METHODS

Integration of DNA Copy Number Alterations and Transcriptional Expression Analysis in Human Gastric Cancer

(2012) Biao Fan et al.   PLoS One

Gene regulatory network inference: evaluation and application to ovarian cancer allows the prioritization of drug targets

(2012) Piyush B Madhamshettiwar et al.   Genome Medicine

Integrated analysis of whole genome exon array and array-comparative genomic hybridization in gastric and colorectal cancer cells

(2011) Kazuyuki Furuta et al.   CANCER SCIENCE

Integrated Analyses of Copy Number Variations and Gene Expression in Lung Adenocarcinoma

(2011) Tzu-Pin Lu et al.   PLoS One

Identifying Causal Genes and Dysregulated Pathways in Complex Diseases

(2011) Yoo-Ah Kim et al.   PLoS Computational Biology

GISTIC2.0 facilitates sensitive and confident localization of the targets of focal somatic copy-number alteration in human cancers

(2011) Craig H Mermel et al.   GENOME BIOLOGY

Normal colon epithelium: a dataset for the analysis of gene expression and alternative splicing events in colon disease

(2010) Wilfrido Mojica et al.   BMC GENOMICS

AltAnalyze and DomainGraph: analyzing and visualizing exon expression data

(2010) Dorothea Emig et al.   NUCLEIC ACIDS RESEARCH

Inferring Regulatory Networks from Expression Data Using Tree-Based Methods

(2010) Vân Anh Huynh-Thu et al.   PLoS One

Integrative genomics reveals mechanisms of copy number alterations responsible for transcriptional deregulation in colorectal cancer

(2009) Jordi Camps et al.   GENES CHROMOSOMES & CANCER

Gene Expression and Isoform Variation Analysis using Affymetrix Exon Arrays

(2008) Amandine Bemmo et al.   BMC GENOMICS

Alternative isoform regulation in human tissue transcriptomes

(2008) Eric T. Wang et al.   NATURE

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

(2008) Qun Pan et al.   NATURE GENETICS

Whole genome exon arrays identify differential expression of alternatively spliced, cancer-related genes in lung cancer

(2008) Liqiang Xi et al.   NUCLEIC ACIDS RESEARCH