De Novo Transcriptome Assembly and Comparative Analysis of Differentially Expressed Genes in Prunus dulcis Mill. in Response to Freezing Stress

Transcriptome Analysis of Differentially Expressed Genes Relevant to Variegation in Peach Flowers

(2014) Yingnan Chen et al.   PLoS One

Molecular switch for cold acclimation — anatomy of the cold-inducible promoter in plants

(2013) Yue Jiang et al.   BIOCHEMISTRY-MOSCOW

EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments

(2013) Ning Leng et al.   BIOINFORMATICS

De novo sequencing and transcriptome analysis of the desert shrub, Ammopiptanthus mongolicus, during cold acclimation using Illumina/Solexa

(2013) Tao Pang et al.   BMC GENOMICS

Transcriptomic profiling of the salt-stress response in the wild recretohalophyte Reaumuria trigyna

(2013) Zhen-hua Dang et al.   BMC GENOMICS

Four distinct types of dehydration stress memory genes in Arabidopsis thaliana

(2013) Yong Ding et al.   BMC PLANT BIOLOGY

Genome-wide identification and analysis of early heat stress responsive genes in rice

(2013) Ki-Hong Jung et al.   JOURNAL OF PLANT BIOLOGY

The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution

(2013) Ignazio Verde et al.   NATURE GENETICS

Genome-wide expression profiles of seasonal bud dormancy at four critical stages in Japanese apricot

(2013) Wenjun Zhong et al.   PLANT MOLECULAR BIOLOGY

Deep RNA-Seq uncovers the peach transcriptome landscape

(2013) Lu Wang et al.   PLANT MOLECULAR BIOLOGY

Comparative RNA-Seq Analysis of Early-Infected Peach Leaves by the Invasive Phytopathogen Xanthomonas arboricola pv. pruni

(2013) Didier Socquet-Juglard et al.   PLoS One

Cerebroside C Increases Tolerance to Chilling Injury and Alters Lipid Composition in Wheat Roots

(2013) Hong-Xia Li et al.   PLoS One

A global profiling of uncapped mRNAs under cold stress reveals specific decay patterns and endonucleolytic cleavages in Brachypodium distachyon

(2013) Jingyu Zhang et al.   GENOME BIOLOGY

De novo assembly and characterization of the root transcriptome of Aegilops variabilis during an interaction with the cereal cyst nematode

(2012) De-Lin Xu et al.   BMC GENOMICS

Deep-sequencing transcriptome analysis of chilling tolerance mechanisms of a subnival alpine plant, Chorispora bungeana

(2012) Zhiguang Zhao et al.   BMC PLANT BIOLOGY

Cold acclimation and floral development in almond bud break: insights into the regulatory pathways

(2012) Pedro M Barros et al.   JOURNAL OF EXPERIMENTAL BOTANY

Effects of Drought on Gene Expression in Maize Reproductive and Leaf Meristem Tissue Revealed by RNA-Seq

(2012) A. Kakumanu et al.   PLANT PHYSIOLOGY

RNA-Seq Assembly – Are We There Yet?

(2012) Simon Schliesky et al.   Frontiers in Plant Science

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Fatty acid composition and antioxidant system in relation to susceptibility of loquat fruit to chilling injury

(2011) Shifeng Cao et al.   FOOD CHEMISTRY

Cold affects the transcription of fatty acid desaturases and oil quality in the fruit of Olea europaea L. genotypes with different cold hardiness

(2011) M. Matteucci et al.   JOURNAL OF EXPERIMENTAL BOTANY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Overexpression of the trehalose-6-phosphate synthase gene OsTPS1 enhances abiotic stress tolerance in rice

(2011) Hao-Wen Li et al.   PLANTA

RNA-based regulation in the plant circadian clock

(2011) Dorothee Staiger et al.   TRENDS IN PLANT SCIENCE

Massive parallel sequencing of mRNA in identification of unannotated salinity stress-inducible transcripts in rice (Oryza sativa L.)

(2010) Hiroshi Mizuno et al.   BMC GENOMICS

Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq

(2010) T. Lu et al.   GENOME RESEARCH

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

The CBFs: Three arabidopsis transcription factors to cold acclimate

(2010) Joaquín Medina et al.   PLANT SCIENCE

Freezing Tolerance in Plants Requires Lipid Remodeling at the Outer Chloroplast Membrane

(2010) Eric R. Moellering et al.   SCIENCE

Biochemical changes in dormant grapevine shoot tissues in response to chilling: Possible role in dormancy release

(2010) Hatem Ben Mohamed et al.   SCIENTIA HORTICULTURAE

Differentially expressed genes between drought-tolerant and drought-sensitive barley genotypes in response to drought stress during the reproductive stage

(2009) Peiguo Guo et al.   JOURNAL OF EXPERIMENTAL BOTANY

Trehalose Metabolism and Signaling

(2008) Matthew J. Paul et al.   Annual Review of Plant Biology

Simple and Efficient Isolation of High-Quality Total RNA fromHibiscus tiliaceus, a Mangrove Associate and Its Relatives

(2008) G. Yang et al.   PREPARATIVE BIOCHEMISTRY & BIOTECHNOLOGY