Deep RNA-Seq uncovers the peach transcriptome landscape

Comparative RNA-Seq Analysis of Early-Infected Peach Leaves by the Invasive Phytopathogen Xanthomonas arboricola pv. pruni

(2013) Didier Socquet-Juglard et al.   PLoS One

Identification, characterization, and utilization of genome-wide simple sequence repeats to identify a QTL for acidity in apple

(2012) Qiong Zhang et al.   BMC GENOMICS

MATS: a Bayesian framework for flexible detection of differential alternative splicing from RNA-Seq data

(2012) Shihao Shen et al.   NUCLEIC ACIDS RESEARCH

Transcriptome Analyses of a Salt-Tolerant Cytokinin-Deficient Mutant Reveal Differential Regulation of Salt Stress Response by Cytokinin Deficiency

(2012) Rie Nishiyama et al.   PLoS One

Development and Evaluation of a 9K SNP Array for Peach by Internationally Coordinated SNP Detection and Validation in Breeding Germplasm

(2012) Ignazio Verde et al.   PLoS One

The peach genome

(2012) Pere Arús et al.   Tree Genetics & Genomes

Whole genome sequencing of peach (Prunus persica L.) for SNP identification and selection

(2011) Riaz Ahmad et al.   BMC GENOMICS

Identification and characterization of wheat long non-protein coding RNAs responsive to powdery mildew infection and heat stress by using microarray analysis and SBS sequencing

(2011) Mingming Xin et al.   BMC PLANT BIOLOGY

A microarray approach to identify genes involved in seed-pericarp cross-talk and development in peach

(2011) Claudio Bonghi et al.   BMC PLANT BIOLOGY

Study of 'Redhaven' peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid and norisoprenoid volatile metabolism

(2011) Federica Brandi et al.   BMC PLANT BIOLOGY

A high-throughput apple SNP genotyping platform using the GoldenGate™ assay

(2011) M. Awais Khan et al.   GENE

New approaches to Prunus transcriptome analysis

(2011) Pedro Martínez-Gómez et al.   GENETICA

Gene Expression is Highly Regulated in Early Developing Fruit of Apple

(2011) Ruth Elena Soria-Guerra et al.   PLANT MOLECULAR BIOLOGY REPORTER

Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.)

(2010) Pablo F Cavagnaro et al.   BMC GENOMICS

Identification of genes associated with growth cessation and bud dormancy entrance using a dormancy-incapable tree mutant

(2010) Sergio Jiménez et al.   BMC PLANT BIOLOGY

Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq

(2010) T. Lu et al.   GENOME RESEARCH

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

(2010) K. Wang et al.   NUCLEIC ACIDS RESEARCH

Gene expression of DAM5 and DAM6 is suppressed by chilling temperatures and inversely correlated with bud break rate

(2010) S. Jiménez et al.   PLANT MOLECULAR BIOLOGY

Vernalization-Mediated Epigenetic Silencing by a Long Intronic Noncoding RNA

(2010) J. B. Heo et al.   SCIENCE

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Selection of reliable reference genes for gene expression studies in peach using real-time PCR

(2009) Zhaoguo Tong et al.   BMC MOLECULAR BIOLOGY

Phenotypic and fine genetic characterization of the D locus controlling fruit acidity in peach

(2009) Karima Boudehri et al.   BMC PLANT BIOLOGY

Dormancy-associated MADS genes from the EVG locus of peach [Prunus persica (L.) Batsch] have distinct seasonal and photoperiodic expression patterns

(2009) Z. Li et al.   JOURNAL OF EXPERIMENTAL BOTANY

Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target

(2009) Szymon Swiezewski et al.   NATURE

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Genome-wide analyses of alternative splicing in plants: Opportunities and challenges

(2008) W. B. Barbazuk et al.   GENOME RESEARCH

Development of a set of SNP markers present in expressed genes of the apple

(2008) David Chagné et al.   GENOMICS

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

S-RNase triggers mitochondrial alteration and DNA degradation in the incompatible pollen tube ofPyrus pyrifolia in vitro

(2008) Chun-Lei Wang et al.   PLANT JOURNAL

Multiple Models for Rosaceae Genomics

(2008) V. Shulaev et al.   PLANT PHYSIOLOGY

Comparative analysis of expressed sequence tags from tissues in ripening stages of peach (Prunus persica L. Batsch)

(2008) A. Vecchietti et al.   Tree Genetics & Genomes

A framework physical map for peach, a model Rosaceae species

(2008) T. N. Zhebentyayeva et al.   Tree Genetics & Genomes