Characterization of Withania somnifera Leaf Transcriptome and Expression Analysis of Pathogenesis – Related Genes during Salicylic Acid Signaling

Large scale in-silico identification and characterization of simple sequence repeats (SSRs) from de novo assembled transcriptome of Catharanthus roseus (L.) G. Don

(2014) Santosh Kumar et al.   PLANT CELL REPORTS

Analysis of the leaf transcriptome of Musa acuminata during interaction with Mycosphaerella musicola: gene assembly, annotation and marker development

(2013) Marco A N Passos et al.   BMC GENOMICS

Transcriptome analysis of two buffalograss cultivars

(2013) Michael Wachholtz et al.   BMC GENOMICS

Insights into organ-specific pathogen defense responses in plants: RNA-seq analysis of potato tuber-Phytophthora infestans interactions

(2013) Liangliang Gao et al.   BMC GENOMICS

Transcriptome-based discovery of pathways and genes related to resistance against Fusarium head blight in wheat landrace Wangshuibai

(2013) Jin Xiao et al.   BMC GENOMICS

RNA-Seq analysis of Citrus reticulata in the early stages of Xylella fastidiosa infection reveals auxin-related genes as a defense response

(2013) Carolina M Rodrigues et al.   BMC GENOMICS

Changes in leaf proteome profile of Arabidopsis thaliana in response to salicylic acid

(2013) Riddhi Datta et al.   JOURNAL OF BIOSCIENCES

The Endophytic Strain Fusarium oxysporum Fo47: A Good Candidate for Priming the Defense Responses in Tomato Roots

(2013) Sébastien Aimé et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Salicylic Acid Suppresses Jasmonic Acid Signaling Downstream of SCFCOI1-JAZ by Targeting GCC Promoter Motifs via Transcription Factor ORA59

(2013) D. Van der Does et al.   PLANT CELL

Increased production of withanolide A, withanone, and withaferin A in hairy root cultures of Withania somnifera (L.) Dunal elicited with methyl jasmonate and salicylic acid

(2013) Ganeshan Sivanandhan et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Comparative RNA-Seq Analysis of Early-Infected Peach Leaves by the Invasive Phytopathogen Xanthomonas arboricola pv. pruni

(2013) Didier Socquet-Juglard et al.   PLoS One

De Novo Assembly, Functional Annotation and Comparative Analysis of Withania somnifera Leaf and Root Transcriptomes to Identify Putative Genes Involved in the Withanolides Biosynthesis

(2013) Parul Gupta et al.   PLoS One

Transcriptome Analysis in Sheepgrass (Leymus chinensis): A Dominant Perennial Grass of the Eurasian Steppe

(2013) Shuangyan Chen et al.   PLoS One

Characterization of a Pathogen Induced Thaumatin-Like Protein Gene AdTLP from Arachis diogoi, a Wild Peanut

(2013) Naveen Kumar Singh et al.   PLoS One

Withaferin A: a proteasomal inhibitor promotes healing after injury and exerts anabolic effect on osteoporotic bone

(2013) V Khedgikar et al.   Cell Death & Disease

The identification and differential expression of Eucalyptus grandis pathogenesis-related genes in response to salicylic acid and methyl jasmonate

(2013) Ronishree Naidoo et al.   Frontiers in Plant Science

Tomato transcriptome and mutant analyses suggest a role for plant stress hormones in the interaction between fruit and Botrytis cinerea

(2013) Barbara Blanco-Ulate et al.   Frontiers in Plant Science

Optimization of Elicitation Conditions with Methyl Jasmonate and Salicylic Acid to Improve the Productivity of Withanolides in the Adventitious Root Culture of Withania somnifera (L.) Dunal

(2012) Ganeshan Sivanandhan et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

(2012) Marcel H. Schulz et al.   BIOINFORMATICS

De Novo characterization of the banana root transcriptome and analysis of gene expression under Fusarium oxysporum f. sp. Cubense tropical race 4 infection

(2012) Zhuo Wang et al.   BMC GENOMICS

Next generation sequencing and de novo transcriptome analysis of Costus pictus D. Don, a non-model plant with potent anti-diabetic properties

(2012) Ramasamy S Annadurai et al.   BMC GENOMICS

Isolation and characterization of pathogen defence-related class I chitinase from the actinorhizal treeCasuarina equisetifolia

(2012) R. Veluthakkal et al.   FOREST PATHOLOGY

Characterization of the defense transcriptome responsive to Fusarium oxysporum-infection in Arabidopsis using RNA-seq

(2012) Qian-Hao Zhu et al.   GENE

Chitosan enhances withanolides production in adventitious root cultures of Withania somnifera (L.) Dunal

(2012) G. Sivanandhan et al.   INDUSTRIAL CROPS AND PRODUCTS

Transcriptome profiling of genes induced by salicylic acid and methyl jasmonate in Polygonum minus

(2012) Su-Fang Ee et al.   MOLECULAR BIOLOGY REPORTS

A Comprehensive Transcriptome Assembly of Pigeonpea (Cajanus cajan L.) using Sanger and Second-Generation Sequencing Platforms

(2012) Himabindu Kudapa et al.   Molecular Plant

RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics

(2012) M. Lohse et al.   NUCLEIC ACIDS RESEARCH

De novo sequencing and a comprehensive analysis of purple sweet potato (Impomoea batatas L.) transcriptome

(2012) Fuliang Xie et al.   PLANTA

Transcriptome Profiling of Citrus Fruit Response to Huanglongbing Disease

(2012) Federico Martinelli et al.   PLoS One

Cloning and characterization of 2-C-methyl-d-erythritol-4-phosphate pathway genes for isoprenoid biosynthesis from Indian ginseng, Withania somnifera

(2012) Parul Gupta et al.   PROTOPLASMA

Effect of a benzothiadiazole on inducing resistance of soybean to Phytophthora sojae

(2012) Qingmei Han et al.   PROTOPLASMA

Hormonal Modulation of Plant Immunity

(2011) Corné M.J. Pieterse et al.   Annual Review of Cell and Developmental Biology

Hormone Crosstalk in Plant Disease and Defense: More Than Just JASMONATE-SALICYLATE Antagonism

(2011) Alexandre Robert-Seilaniantz et al.   Annual Review of Phytopathology

Identification of reference genes for reverse transcription quantitative real-time PCR normalization in pepper (Capsicum annuum L.)

(2011) Hongjian Wan et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity

(2011) Massimo Iorizzo et al.   BMC GENOMICS

De novo assembly of Euphorbia fischeriana root transcriptome identifies prostratin pathway related genes

(2011) Roberto A Barrero et al.   BMC GENOMICS

De Novo Assembly of Chickpea Transcriptome Using Short Reads for Gene Discovery and Marker Identification

(2011) R. Garg et al.   DNA RESEARCH

Comparative analysis of pathogenesis-related protein 10 (PR10) genes between fungal resistant and susceptible peppers

(2011) Hyun Cheol Soh et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Genetic Dissection of Salicylic Acid-Mediated Defense Signaling Networks inArabidopsis

(2011) Gina Ng et al.   GENETICS

Application of HR-MAS NMR spectroscopy for studying chemotype variations of Withania somnifera (L.) Dunal

(2011) S. K. Bharti et al.   MAGNETIC RESONANCE IN CHEMISTRY

RSOsPR10 Expression in Response to Environmental Stresses is Regulated Antagonistically by Jasmonate/Ethylene and Salicylic Acid Signaling Pathways in Rice Roots

(2011) Kaoru Takeuchi et al.   PLANT AND CELL PHYSIOLOGY

Differential gene induction in resistant and susceptible potato cultivars at early stages of infection by Phytophthora infestans

(2011) Elżbieta Orłowska et al.   PLANT CELL REPORTS

Differential expression of farnesyl diphosphate synthase gene from Withania somnifera in different chemotypes and in response to elicitors

(2011) Parul Gupta et al.   PLANT GROWTH REGULATION

Defense response of tomato fruit at different maturity stages to salicylic acid and ethephon

(2011) Yu-Ying Wang et al.   SCIENTIA HORTICULTURAE

Identification of suitable reference genes for studying gene expression in cucumber plants subjected to abiotic stress and growth regulators

(2010) M. Migocka et al.   MOLECULAR BREEDING

Stable internal reference genes for normalization of real-time RT-PCR in tobacco (Nicotiana tabacum) during development and abiotic stress

(2010) Gregor W. Schmidt et al.   MOLECULAR GENETICS AND GENOMICS

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

Impact of natural genetic variation on the transcriptome of autotetraploidArabidopsis thaliana

(2010) Zheng Yu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pathogenesis-related genes and proteins in forest tree species

(2010) Radha Veluthakkal et al.   TREES-STRUCTURE AND FUNCTION

Salicylic Acid, a Multifaceted Hormone to Combat Disease

(2009) A. Corina Vlot et al.   Annual Review of Phytopathology

Early genomic responses to salicylic acid in Arabidopsis

(2009) Francisca Blanco et al.   PLANT MOLECULAR BIOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Interplay between MAMP-triggered and SA-mediated defense responses

(2008) Kenichi Tsuda et al.   PLANT JOURNAL

Effect of benzothiadiazole on the metabolome of Arabidopsis thaliana

(2008) Thi Thanh Hien Dao et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Building up plant defenses by breaking down proteins

(2008) Stijn L. Delauré et al.   PLANT SCIENCE

Identification of an OsPR10a promoter region responsive to salicylic acid

(2008) Seon-Hee Hwang et al.   PLANTA

Salicylic acid alleviated pathogen-induced oxidative stress in harvested sweet cherry fruit

(2008) Xiangbin Xu et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

Salicylic acid induces H2O2 production and endochitinase gene expression but not ethylene biosynthesis in Castanea sativa in vitro model system

(2007) Antoine L. Harfouche et al.   JOURNAL OF PLANT PHYSIOLOGY