Transcriptomic Analysis Reveals Evidence for a Cryptic Plastid in the Colpodellid Voromonas pontica, a Close Relative of Chromerids and Apicomplexan Parasites

Dinoflagellate phylogeny revisited: Using ribosomal proteins to resolve deep branching dinoflagellate clades

(2013) Tsvetan R. Bachvaroff et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A Systematic In Silico Search for Target Similarity Identifies Several Approved Drugs with Potential Activity against the Plasmodium falciparum Apicoplast

(2013) Nadlla Alves Bispo et al.   PLoS One

Experimental Genetics of Plasmodium berghei NFU in the Apicoplast Iron-Sulfur Cluster Biogenesis Pathway

(2013) Joana M. Haussig et al.   PLoS One

The Suf Iron-Sulfur Cluster Synthesis Pathway Is Required for Apicoplast Maintenance in Malaria Parasites

(2013) Jolyn E. Gisselberg et al.   PLoS Pathogens

Parasites FeS Up: Iron-Sulfur Cluster Biogenesis in Eukaryotic Pathogens

(2013) Teegan A. Dellibovi-Ragheb et al.   PLoS Pathogens

Make It, Take It, or Leave It: Heme Metabolism of Parasites

(2013) Luděk Kořený et al.   PLoS Pathogens

Red algal parasites: Models for a life history evolution that leaves photosynthesis behind again and again

(2012) Nicolas A. Blouin et al.   BIOESSAYS

The Plasmodium Apicoplast Genome: Conserved Structure and Close Relationship of P. ovale to Rodent Malaria Parasites

(2012) N. Arisue et al.   MOLECULAR BIOLOGY AND EVOLUTION

PredAlgo: A New Subcellular Localization Prediction Tool Dedicated to Green Algae

(2012) Marianne Tardif et al.   MOLECULAR BIOLOGY AND EVOLUTION

RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics

(2012) M. Lohse et al.   NUCLEIC ACIDS RESEARCH

CDD: conserved domains and protein three-dimensional structure

(2012) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

An Analysis of Dinoflagellate Metabolism Using EST Data

(2012) Erin R. Butterfield et al.   PROTIST

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

Biochemistry of the non-mevalonate isoprenoid pathway

(2011) Tobias Gräwert et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Sequence Evidence for the Presence of Two Tetrapyrrole Pathways in Euglena gracilis

(2011) Luděk Kořený et al.   Genome Biology and Evolution

Red and Problematic Green Phylogenetic Signals among Thousands of Nuclear Genes from the Photosynthetic and Apicomplexa-Related Chromera velia

(2011) Christian Woehle et al.   Genome Biology and Evolution

The search for the missing link: A relic plastid in Perkinsus?

(2011) José A. Fernández Robledo et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Interaction between sulphur mobilisation proteins SufB and SufC: Evidence for an iron–sulphur cluster biogenesis pathway in the apicoplast of Plasmodium falciparum

(2011) Bijay Kumar et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Apicoplast isoprenoid precursor synthesis and the molecular basis of fosmidomycin resistance inToxoplasma gondii

(2011) Sethu C. Nair et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Tetrapyrrole Synthesis of Photosynthetic Chromerids Is Likely Homologous to the Unusual Pathway of Apicomplexan Parasites

(2011) Luděk Kořený et al.   PLANT CELL

Fosmidomycin Uptake into Plasmodium and Babesia-Infected Erythrocytes Is Facilitated by Parasite-Induced New Permeability Pathways

(2011) Stefan Baumeister et al.   PLoS One

Estimating the timing of early eukaryotic diversification with multigene molecular clocks

(2011) L. W. Parfrey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Morphology, Ultrastructure and Life Cycle of Vitrella brassicaformis n. sp., n. gen., a Novel Chromerid from the Great Barrier Reef

(2011) Miroslav Oborník et al.   PROTIST

Ancient and essential: the assembly of iron–sulfur clusters in plants

(2011) Janneke Balk et al.   TRENDS IN PLANT SCIENCE

Chemical Rescue of Malaria Parasites Lacking an Apicoplast Defines Organelle Function in Blood-Stage Plasmodium falciparum

(2011) Ellen Yeh et al.   PLOS BIOLOGY

A Systematic Screen to Discover and Analyze Apicoplast Proteins Identifies a Conserved and Essential Protein Import Factor

(2011) Lilach Sheiner et al.   PLoS Pathogens

Iron–Sulfur Clusters: Biogenesis, Molecular Mechanisms, and Their Functional Significance

(2010) Xiang Ming Xu et al.   ANTIOXIDANTS & REDOX SIGNALING

ANALYSES OF THE COMPLETE CHLOROPLAST GENOME SEQUENCES OF TWO MEMBERS OF THE PELAGOPHYCEAE: AUREOCOCCUS ANOPHAGEFFERENS CCMP1984 AND AUREOUMBRA LAGUNENSIS CCMP15071

(2010) Han Chuan Ong et al.   JOURNAL OF PHYCOLOGY

Phylogenetic and Biochemical Evidence Supports the Recruitment of an ADP-Glucose Translocator for the Export of Photosynthate during Plastid Endosymbiosis

(2010) C. Colleoni et al.   MOLECULAR BIOLOGY AND EVOLUTION

The evolution, metabolism and functions of the apicoplast

(2010) L. Lim et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A New Method for Predicting the Subcellular Localization of Eukaryotic Proteins with Both Single and Multiple Sites: Euk-mPLoc 2.0

(2010) Kuo-Chen Chou et al.   PLoS One

A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids

(2010) J. Janouskovec et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

(2009) Nicolas Lartillot et al.   BIOINFORMATICS

The carbon and energy sources of the non-photosynthetic plastid in the malaria parasite

(2009) Liting Lim et al.   FEBS LETTERS

The Complete Plastid Genome Sequence of the Secondarily Nonphotosynthetic Alga Cryptomonas paramecium: Reduction, Compaction, and Accelerated Evolutionary Rate

(2009) Natalie Donaher et al.   Genome Biology and Evolution

Function and biogenesis of iron–sulphur proteins

(2009) Roland Lill   NATURE

Empirical profile mixture models for phylogenetic reconstruction

(2008) Le Si Quang et al.   BIOINFORMATICS

HECTAR: A method to predict subcellular targeting in heterokonts

(2008) Bernhard Gschloessl et al.   BMC BIOINFORMATICS

Plastid-Derived Genes in the Nonphotosynthetic Alveolate Oxyrrhis marina

(2008) C. H. Slamovits et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Cryptic Algal Group Unveiled: A Plastid Biosynthesis Pathway in the Oyster Parasite Perkinsus marinus

(2008) M. Matsuzaki et al.   MOLECULAR BIOLOGY AND EVOLUTION

An Improved General Amino Acid Replacement Matrix

(2008) S. Q. Le et al.   MOLECULAR BIOLOGY AND EVOLUTION

A photosynthetic alveolate closely related to apicomplexan parasites

(2008) Robert B. Moore et al.   NATURE

Assessing the gene space in draft genomes

(2008) Genis Parra et al.   NUCLEIC ACIDS RESEARCH

Functional Characterization of the Plastidic Phosphate Translocator Gene Family from the Thermo-Acidophilic Red Alga Galdieria sulphuraria Reveals Specific Adaptations of Primary Carbon Partitioning in Green Plants and Red Algae

(2008) M. Linka et al.   PLANT PHYSIOLOGY

Functional Gene Losses Occur with Minimal Size Reduction in the Plastid Genome of the Parasitic Liverwort Aneura mirabilis

(2007) N. J. Wickett et al.   MOLECULAR BIOLOGY AND EVOLUTION

Nifs and Sufs in malaria

(2003) K. E. S. Ellis et al.   MOLECULAR MICROBIOLOGY