Longitudinal Antigenic Sequences and Sites from Intra-Host Evolution (LASSIE) Identifies Immune-Selected HIV Variants
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Title
Longitudinal Antigenic Sequences and Sites from Intra-Host Evolution (LASSIE) Identifies Immune-Selected HIV Variants
Authors
Keywords
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Journal
Viruses-Basel
Volume 7, Issue 10, Pages 5443-5475
Publisher
MDPI AG
Online
2015-10-22
DOI
10.3390/v7102881
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Note: Only part of the references are listed.- The unrooted set covering connected subgraph problem differentiating between HIV envelope sequences
- (2016) Stephen J. Maher et al. EUROPEAN JOURNAL OF OPERATIONAL RESEARCH
- Manipulating the Selection Forces during Affinity Maturation to Generate Cross-Reactive HIV Antibodies
- (2015) Shenshen Wang et al. CELL
- Maturation and Diversity of the VRC01-Antibody Lineage over 15 Years of Chronic HIV-1 Infection
- (2015) Xueling Wu et al. CELL
- Strain-Specific V3 and CD4 Binding Site Autologous HIV-1 Neutralizing Antibodies Select Neutralization-Resistant Viruses
- (2015) M. Anthony Moody et al. Cell Host & Microbe
- Antibody responses to envelope glycoproteins in HIV-1 infection
- (2015) Dennis R Burton et al. NATURE IMMUNOLOGY
- Genetic Diversity Underlying the Envelope Glycoproteins of Hepatitis C Virus: Structural and Functional Consequences and the Implications for Vaccine Design
- (2015) Alexander Tarr et al. Viruses-Basel
- Cooperation of B Cell Lineages in Induction of HIV-1-Broadly Neutralizing Antibodies
- (2014) Feng Gao et al. CELL
- Progress in HIV-1 vaccine development
- (2014) Barton F. Haynes et al. JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY
- Envelope Variants Circulating as Initial Neutralization Breadth Developed in Two HIV-Infected Subjects Stimulate Multiclade Neutralizing Antibodies in Rabbits
- (2014) D. C. Malherbe et al. JOURNAL OF VIROLOGY
- Emergence of Broadly Neutralizing Antibodies and Viral Coevolution in Two Subjects during the Early Stages of Infection with Human Immunodeficiency Virus Type 1
- (2014) D. N. Sather et al. JOURNAL OF VIROLOGY
- Host Genetic and Viral Determinants of HIV-1 RNA Set Point among HIV-1 Seroconverters from Sub-Saharan Africa
- (2014) Romel D. Mackelprang et al. JOURNAL OF VIROLOGY
- Structure and immune recognition of trimeric pre-fusion HIV-1 Env
- (2014) Marie Pancera et al. NATURE
- Developmental pathway for potent V1V2-directed HIV-neutralizing antibodies
- (2014) Nicole A. Doria-Rose et al. NATURE
- Affinity maturation in an HIV broadly neutralizing B-cell lineage through reorientation of variable domains
- (2014) D. Fera et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Route of HIV Escape from Immune Response Targeting Multiple Sites Is Determined by the Cost-Benefit Tradeoff of Escape Mutations
- (2014) Rebecca Batorsky et al. PLoS Computational Biology
- Loss and Recovery of Genetic Diversity in Adapting Populations of HIV
- (2014) Pleuni S. Pennings et al. PLoS Genetics
- Reconstructing a B-Cell Clonal Lineage. II. Mutation, Selection, and Affinity Maturation
- (2014) Thomas B. Kepler et al. Frontiers in Immunology
- Prevalence of broadly neutralizing antibody responses during chronic HIV-1 infection
- (2013) Peter Hraber et al. AIDS
- A multiple-alignment based primer design algorithm for genetically highly variable DNA targets
- (2013) Johanna Brodin et al. BMC BIOINFORMATICS
- Vaccine Induction of Antibodies against a Structurally Heterogeneous Site of Immune Pressure within HIV-1 Envelope Protein Variable Regions 1 and 2
- (2013) Hua-Xin Liao et al. IMMUNITY
- HIV-1 neutralizing antibodies: understanding nature's pathways
- (2013) John R. Mascola et al. IMMUNOLOGICAL REVIEWS
- Co-evolution of a broadly neutralizing HIV-1 antibody and founder virus
- (2013) Hua-Xin Liao et al. NATURE
- Supersite of immune vulnerability on the glycosylated face of HIV-1 envelope glycoprotein gp120
- (2013) Leopold Kong et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Genotype 1 Hepatitis C Virus Envelope Features That Determine Antiviral Response Assessed through Optimal Covariance Networks
- (2013) John M. Murray et al. PLoS One
- Computational analysis of anti-HIV-1 antibody neutralization panel data to identify potential functional epitope residues
- (2013) A. P. West et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Progress in HIV-1 vaccine development
- (2013) Barton F. Haynes et al. Current Opinion in HIV and AIDS
- Viral Escape from HIV-1 Neutralizing Antibodies Drives Increased Plasma Neutralization Breadth through Sequential Recognition of Multiple Epitopes and Immunotypes
- (2013) Constantinos Kurt Wibmer et al. PLoS Pathogens
- Human Antibodies that Neutralize HIV-1: Identification, Structures, and B Cell Ontogenies
- (2012) Peter D. Kwong et al. IMMUNITY
- B-cell–lineage immunogen design in vaccine development with HIV-1 as a case study
- (2012) Barton F Haynes et al. NATURE BIOTECHNOLOGY
- Evolution of an HIV glycan–dependent broadly neutralizing antibody epitope through immune escape
- (2012) Penny L Moore et al. NATURE MEDICINE
- Highly potent HIV-specific antibody neutralization in vitro translates into effective protection against mucosal SHIV challenge in vivo
- (2012) B. Moldt et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Motif-optimized subtype A HIV envelope-based DNA vaccines rapidly elicit neutralizing antibodies when delivered sequentially
- (2012) Franco Pissani et al. VACCINE
- Emergence of stable polymorphisms driven by evolutionary games between mutants
- (2012) Weini Huang et al. Nature Communications
- Detecting Individual Sites Subject to Episodic Diversifying Selection
- (2012) Ben Murrell et al. PLoS Genetics
- Elucidation of Hepatitis C Virus Transmission and Early Diversification by Single Genome Sequencing
- (2012) Hui Li et al. PLoS Pathogens
- Early Low-Titer Neutralizing Antibodies Impede HIV-1 Replication and Select for Virus Escape
- (2012) Katharine J. Bar et al. PLoS Pathogens
- Whole Genome Deep Sequencing of HIV-1 Reveals the Impact of Early Minor Variants Upon Immune Recognition During Acute Infection
- (2012) Matthew R. Henn et al. PLoS Pathogens
- Analysis of a Clonal Lineage of HIV-1 Envelope V2/V3 Conformational Epitope-Specific Broadly Neutralizing Antibodies and Their Inferred Unmutated Common Ancestors
- (2011) M. Bonsignori et al. JOURNAL OF VIROLOGY
- Fitness Costs and Diversity of the Cytotoxic T Lymphocyte (CTL) Response Determine the Rate of CTL Escape during Acute and Chronic Phases of HIV Infection
- (2011) V. V. Ganusov et al. JOURNAL OF VIROLOGY
- Sequential Immunization with a Subtype B HIV-1 Envelope Quasispecies Partially Mimics the In Vivo Development of Neutralizing Antibodies
- (2011) D. C. Malherbe et al. JOURNAL OF VIROLOGY
- Broad neutralization coverage of HIV by multiple highly potent antibodies
- (2011) Laura M. Walker et al. NATURE
- Focused Evolution of HIV-1 Neutralizing Antibodies Revealed by Structures and Deep Sequencing
- (2011) X. Wu et al. SCIENCE
- Increasing the Potency and Breadth of an HIV Antibody by Using Structure-Based Rational Design
- (2011) R. Diskin et al. SCIENCE
- Sequence and Structural Convergence of Broad and Potent HIV Antibodies That Mimic CD4 Binding
- (2011) J. F. Scheid et al. SCIENCE
- The Role of Antibodies in HIV Vaccines
- (2010) John R. Mascola et al. Annual Review of Immunology
- Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology
- (2010) W. Delport et al. BIOINFORMATICS
- Estimating time since infection in early homogeneous HIV-1 samples using a poisson model
- (2010) Elena E Giorgi et al. BMC BIOINFORMATICS
- Acceleration of Hepatitis C Virus Envelope Evolution in Humans Is Consistent with Progressive Humoral Immune Selection during the Transition from Acute to Chronic Infection
- (2010) L. Liu et al. JOURNAL OF VIROLOGY
- Amphiphilic block copolymers enhance the cellular uptake of DNA molecules through a facilitated plasma membrane transport
- (2010) Raphaël Chèvre et al. NUCLEIC ACIDS RESEARCH
- Transmission of Single HIV-1 Genomes and Dynamics of Early Immune Escape Revealed by Ultra-Deep Sequencing
- (2010) Will Fischer et al. PLoS One
- Structural Basis for Broad and Potent Neutralization of HIV-1 by Antibody VRC01
- (2010) T. Zhou et al. SCIENCE
- Rational Design of Envelope Identifies Broadly Neutralizing Human Monoclonal Antibodies to HIV-1
- (2010) X. Wu et al. SCIENCE
- New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
- (2010) Stéphane Guindon et al. SYSTEMATIC BIOLOGY
- Selection Pressure From Neutralizing Antibodies Drives Sequence Evolution During Acute Infection With Hepatitis C Virus
- (2009) Kimberly A. Dowd et al. GASTROENTEROLOGY
- The first T cell response to transmitted/founder virus contributes to the control of acute viremia in HIV-1 infection
- (2009) Nilu Goonetilleke et al. JOURNAL OF EXPERIMENTAL MEDICINE
- Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection
- (2009) Jesus F. Salazar-Gonzalez et al. JOURNAL OF EXPERIMENTAL MEDICINE
- DNA/Amphiphilic Block Copolymer Nanospheres Promote Low-dose DNA Vaccination
- (2009) Dorian McIlroy et al. MOLECULAR THERAPY
- Broad diversity of neutralizing antibodies isolated from memory B cells in HIV-infected individuals
- (2009) Johannes F. Scheid et al. NATURE
- Broad and Potent Neutralizing Antibodies from an African Donor Reveal a New HIV-1 Vaccine Target
- (2009) L. M. Walker et al. SCIENCE
- The implications of patterns in HIV diversity for neutralizing antibody induction and susceptibility
- (2009) Bette Korber et al. Current Opinion in HIV and AIDS
- HIV-1-specific antibody responses during acute and chronic HIV-1 infection
- (2009) Georgia D Tomaras et al. Current Opinion in HIV and AIDS
- Vaccines: Correlates of Vaccine‐Induced Immunity
- (2008) Stanley A. Plotkin CLINICAL INFECTIOUS DISEASES
- Deciphering Human Immunodeficiency Virus Type 1 Transmission and Early Envelope Diversification by Single-Genome Amplification and Sequencing
- (2008) J. F. Salazar-Gonzalez et al. JOURNAL OF VIROLOGY
- Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection
- (2008) B. F. Keele et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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