Identification of the Novel Candidate Genes and Variants in Boar Liver Tissues with Divergent Skatole Levels Using RNA Deep Sequencing

Porcine skeletal muscle differentially expressed gene ATP5B: molecular characterization, expression patterns, and association analysis with meat quality traits

(2013) Haixia Xu et al.   MAMMALIAN GENOME

The roles of different porcine cytochrome P450 enzymes and cytochrome b5A in skatole metabolism

(2012) P. Wiercinska et al.   Animal

Genome-wide association scan and phased haplotype construction for quantitative trait loci affecting boar taint in three pig breeds

(2012) Vivi R Gregersen et al.   BMC GENOMICS

Liver transcriptome profile in pigs with extreme phenotypes of intramuscular fatty acid composition

(2012) Yuliaxis Ramayo-Caldas et al.   BMC GENOMICS

Detecting differential usage of exons from RNA-seq data

(2012) S. Anders et al.   GENOME RESEARCH

Serum Vaspin Concentrations Are Closely Related to Insulin Resistance, and rs77060950 atSERPINA12Genetically Defines Distinct Group with Higher Serum Levels in Japanese Population

(2012) Sanae Teshigawara et al.   JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM

A single nucleotide polymorphism in the CYP2E1 gene promoter affects skatole content in backfat of boars of two commercial Duroc-sired crossbred populations

(2012) Daniel Mörlein et al.   MEAT SCIENCE

Different scalding techniques do not affect boar taint

(2012) Daniel Mörlein et al.   MEAT SCIENCE

RNA-Seq Approach for Genetic Improvement of Meat Quality in Pig and Evolutionary Insight into the Substrate Specificity of Animal Carbonyl Reductases

(2012) Won Yong Jung et al.   PLoS One

Nutritional Influences on Skatole Formation and Skatole Metabolism in the Pig

(2012) Raffael Wesoly et al.   Animals

Development of a Candidate Reference Method for the Simultaneous Quantitation of the Boar Taint Compounds Androstenone, 3α-Androstenol, 3β-Androstenol, Skatole, and Indole in Pig Fat by Means of Stable Isotope Dilution Analysis–Headspace Solid-Phase Microextraction–Gas Chromatography/Mass Spectrometry

(2011) Jochen Fischer et al.   ANALYTICAL CHEMISTRY

Influence of breed and slaughter weight on boar taint prevalence in entire male pigs

(2011) M. Aluwé et al.   Animal

Expression levels of 25 genes in liver and testis located in a QTL region for androstenone on SSC7q1.2

(2011) A. Robic et al.   ANIMAL GENETICS

The distal end of porcine chromosome 6p is involved in the regulation of skatole levels in boars

(2011) António M Ramos et al.   BMC GENETICS

Exploring the gonad transcriptome of two extreme male pigs with RNA-seq

(2011) Anna Esteve-Codina et al.   BMC GENOMICS

Large scale genome-wide association and LDLA mapping study identifies QTLs for boar taint and related sex steroids

(2011) Eli Grindflek et al.   BMC GENOMICS

A global view of porcine transcriptome in three tissues from a full-sib pair with extreme phenotypes in growth and fat deposition by paired-end RNA sequencing

(2011) Congying Chen et al.   BMC GENOMICS

RNA-seq: technical variability and sampling

(2011) Lauren M McIntyre et al.   BMC GENOMICS

Identification of transcriptome SNPs between Xiphophorus lines and species for assessing allele specific gene expression within F1 interspecies hybrids

(2011) Yingjia Shen et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY

Revealing genetic relationships between compounds affecting boar taint and reproduction in pigs1

(2011) E. Grindflek et al.   JOURNAL OF ANIMAL SCIENCE

Association and expression quantitative trait loci (eQTL) analysis of porcine AMBP, GC and PPP1R3B genes with meat quality traits

(2011) Mehmet Ulas Cinar et al.   MOLECULAR BIOLOGY REPORTS

Examination of Testicular Gene Expression Patterns in Yorkshire Pigs with High and Low Levels of Boar Taint

(2010) Maxwell C. K. Leung et al.   ANIMAL BIOTECHNOLOGY

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Transcriptional Profiling by Deep Sequencing Identifies Differences in mRNA Transcript Abundance in In Vivo-Derived Versus In Vitro-Cultured Porcine Blastocyst Stage Embryos1

(2010) Bethany K. Bauer et al.   BIOLOGY OF REPRODUCTION

Boar Taint Detection Using Parasitoid Biosensors

(2010) Felix Wäckers et al.   JOURNAL OF FOOD SCIENCE

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Association between SNPs within candidate genes and compounds related to boar taint and reproduction

(2009) Maren Moe et al.   BMC GENETICS

RNA-seq: from technology to biology

(2009) Samuel Marguerat et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

A second look into fibre typing – Relation to meat quality

(2009) L. Lefaucheur   MEAT SCIENCE

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Cysteine dioxygenase: a robust system for regulation of cellular cysteine levels

(2008) M. H. Stipanuk et al.   AMINO ACIDS

Performances, meat quality and boar taint of castrates and entire male pigs fed a standard and a raw potato starch-enriched diet

(2008) C. Pauly et al.   Animal

A muscle transcriptome analysis identifies positional candidate genes for a complex trait in pig

(2008) V. Lobjois et al.   ANIMAL GENETICS

Gene expression profiles in liver of pigs with extreme high and low levels of androstenone

(2008) Maren Moe et al.   BMC Veterinary Research

Vaspin: a novel serpin with insulin-sensitizing effects

(2008) Jun Wada   EXPERT OPINION ON INVESTIGATIONAL DRUGS

Keratin–protein kinase C interaction in reactive oxygen species-induced hepatic cell death through mitochondrial signaling

(2008) Jasmin Mathew et al.   FREE RADICAL BIOLOGY AND MEDICINE

Genetic and metabolic aspects of androstenone and skatole deposition in pig adipose tissue: A review

(2008) Annie Robic et al.   GENETICS SELECTION EVOLUTION

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS