Tracing the Transcriptomic Changes in Synthetic Trigenomic allohexaploids of Brassica Using an RNA-Seq Approach

A new RNASeq-based reference transcriptome for sugar beet and its application in transcriptome-scale analysis of vernalization and gibberellin responses

(2012) Effie S Mutasa-Göttgens et al.   BMC GENOMICS

Multiple Mechanisms and Challenges for the Application of Allopolyploidy in Plants

(2012) Kenji Osabe et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Genomic and transcriptomic alterations following hybridisation and genome doubling in trigenomic allohexaploid Brassica carinata × Brassica rapa

(2012) Y. Xu et al.   PLANT BIOLOGY

Intergenomic Rearrangements after Polyploidization of Kengyilia thoroldiana (Poaceae: Triticeae) Affected by Environmental Factors

(2012) Qiuxia Wang et al.   PLoS One

Transcriptomic Analysis of Rice (Oryza sativa) Developing Embryos Using the RNA-Seq Technique

(2012) Hong Xu et al.   PLoS One

Ancestral polyploidy in seed plants and angiosperms

(2011) Yuannian Jiao et al.   NATURE

The genome of the mesopolyploid crop species Brassica rapa

(2011) Xiaowu Wang et al.   NATURE GENETICS

Genome wide gene expression in artificially synthesized amphidiploids of Arabidopsis

(2011) Ryo Fujimoto et al.   PLANT MOLECULAR BIOLOGY

RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

(2010) Andrew J Severin et al.   BMC PLANT BIOLOGY

Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq

(2010) T. Lu et al.   GENOME RESEARCH

Transcriptome profile analysis of floral sex determination in cucumber

(2010) Tao Wu et al.   JOURNAL OF PLANT PHYSIOLOGY

Nonadditive changes to cytosine methylation as a consequence of hybridization and genome duplication in Senecio (Asteraceae)

(2010) MATTHEW J. HEGARTY et al.   MOLECULAR ECOLOGY

Characterization of Transcriptional Complexity during Berry Development in Vitis vinifera Using RNA-Seq

(2010) S. Zenoni et al.   PLANT PHYSIOLOGY

Synthesis of a Brassica trigenomic allohexaploid (B. carinata × B. rapa) de novo and its stability in subsequent generations

(2010) Entang Tian et al.   THEORETICAL AND APPLIED GENETICS

The Role of Hybridization in Plant Speciation

(2009) Pamela S. Soltis et al.   Annual Review of Plant Biology

ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks

(2009) Gabriela Bindea et al.   BIOINFORMATICS

Comparison of next generation sequencing technologies for transcriptome characterization

(2009) P Kerr Wall et al.   BMC GENOMICS

Reciprocal Silencing, Transcriptional Bias and Functional Divergence of Homeologs in Polyploid Cotton (Gossypium)

(2009) B. Chaudhary et al.   GENETICS

Non-additive gene regulation in a citrus allotetraploid somatic hybrid between C. reticulata Blanco and C. limon (L.) Burm

(2009) J B Bassene et al.   HEREDITY

Differential expression of duplicated peroxidase genes in the allotetraploid Brassica napus

(2009) Jianwei Zhao et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Analysis of Gene Expression in Resynthesized Brassica napus Allopolyploids Using Arabidopsis 70mer Oligo Microarrays

(2009) Robert T. Gaeta et al.   PLoS One

TCP genes: a family snapshot ten years later

(2009) Mar Martín-Trillo et al.   TRENDS IN PLANT SCIENCE

Nonadditive Expression of Homoeologous Genes Is Established Upon Polyploidization in Hexaploid Wheat

(2008) M. Pumphrey et al.   GENETICS

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Rapid alterations of gene expression and cytosine methylation in newly synthesized Brassica napus allopolyploids

(2008) Yanhao Xu et al.   PLANTA

Polyploidization as a Retraction Force in Plant Genome Evolution: Sequence Rearrangements in Triticale

(2008) Miguel Bento et al.   PLoS One

Synteny and Collinearity in Plant Genomes

(2008) H. Tang et al.   SCIENCE