A new RNASeq-based reference transcriptome for sugar beet and its application in transcriptome-scale analysis of vernalization and gibberellin responses

De novo assembled expressed gene catalog of a fast-growing Eucalyptus tree produced by Illumina mRNA-Seq

(2011) Eshchar Mizrachi et al.   BMC GENOMICS

Comprehensive transcriptome analysis of the highly complex Pisum sativum genome using next generation sequencing

(2011) Susanne U Franssen et al.   BMC GENOMICS

Composite transcriptome assembly of RNA-seq data in a sheep model for delayed bone healing

(2011) Marten Jäger et al.   BMC GENOMICS

Time course and amplitude of DNA methylation in the shoot apical meristem are critical points for bolting induction in sugar beet and bolting tolerance between genotypes

(2011) Marie-Véronique Trap-Gentil et al.   JOURNAL OF EXPERIMENTAL BOTANY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

GASSST: global alignment short sequence search tool

(2010) Guillaume Rizk et al.   BIOINFORMATICS

Rnnotator: an automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads

(2010) Jeffrey Martin et al.   BMC GENOMICS

Assembly algorithms for next-generation sequencing data

(2010) Jason R. Miller et al.   GENOMICS

Conservation and divergence of autonomous pathway genes in the flowering regulatory network of Beta vulgaris

(2010) Salah F. Abou-Elwafa et al.   JOURNAL OF EXPERIMENTAL BOTANY

Unique evolutionary pattern of numbers of gramineous NBS–LRR genes

(2010) Jing Li et al.   MOLECULAR GENETICS AND GENOMICS

Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana

(2010) Insuk Lee et al.   NATURE BIOTECHNOLOGY

Numbers of genes in the NBS and RLK families vary by more than four-fold within a plant species and are regulated by multiple factors

(2010) Meiping Zhang et al.   NUCLEIC ACIDS RESEARCH

An Antagonistic Pair of FT Homologs Mediates the Control of Flowering Time in Sugar Beet

(2010) P. A. Pin et al.   SCIENCE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Gibberellin as a factor in floral regulatory networks

(2009) E. Mutasa-Gottgens et al.   JOURNAL OF EXPERIMENTAL BOTANY

ABC transporters: the power to change

(2009) Douglas C. Rees et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Sugar beet contains a large CONSTANS-LIKE gene family including a CO homologue that is independent of the early-bolting (B) gene locus

(2008) T. Y. P. Chia et al.   JOURNAL OF EXPERIMENTAL BOTANY

Functional differentiation of the sugar beet root system as indicator of developmental phase change

(2008) Daniele Trebbi et al.   PHYSIOLOGIA PLANTARUM

Modification of gibberellin signalling (metabolism & signal transduction) in sugar beet: analysis of potential targets for crop improvement

(2008) Effie Mutasa-Gottgens et al.   TRANSGENIC RESEARCH

The plant B3 superfamily

(2008) K SWAMINATHAN et al.   TRENDS IN PLANT SCIENCE