Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011

Semantically linking molecular entities in literature through entity relationships

(2012) Sofie Van Landeghem et al.   BMC BIOINFORMATICS

Cross-species gene normalization by species inference

(2011) Chih-Hsuan Wei et al.   BMC BIOINFORMATICS

Named Entity Recognition for Bacterial Type IV Secretion Systems

(2011) Sophia Ananiadou et al.   PLoS One

Ontology design patterns to disambiguate relations between genes and gene products in GENIA

(2011) Robert Hoehndorf et al.   Journal of Biomedical Semantics

Event extraction for DNA methylation

(2011) Tomoko Ohta et al.   Journal of Biomedical Semantics

Assessment of NER solutions against the first and second CALBC Silver Standard Corpus

(2011) Dietrich Rebholz-Schuhmann et al.   Journal of Biomedical Semantics

Coreference based event-argument relation extraction on biomedical text

(2011) Katsumasa Yoshikawa et al.   Journal of Biomedical Semantics

Bacterial Sensor Kinases: Diversity in the Recognition of Environmental Signals

(2010) Tino Krell et al.   Annual Review of Microbiology

Complex event extraction at PubMed scale

(2010) J. Bjorne et al.   BIOINFORMATICS

LINNAEUS: A species name identification system for biomedical literature

(2010) Martin Gerner et al.   BMC BIOINFORMATICS

Two-component signal transduction as potential drug targets in pathogenic bacteria

(2010) Yasuhiro Gotoh et al.   CURRENT OPINION IN MICROBIOLOGY

Sinorhizobium meliloti1021 Loss-of-Function Deletion Mutation inchvIand Its Phenotypic Characteristics

(2010) Chunxia Wang et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Event extraction for systems biology by text mining the literature

(2010) Sophia Ananiadou et al.   TRENDS IN BIOTECHNOLOGY

A Comprehensive Benchmark of Kernel Methods to Extract Protein–Protein Interactions from Literature

(2010) Domonkos Tikk et al.   PLoS Computational Biology

High-performance gene name normalization with GENO

(2009) J. Wermter et al.   BIOINFORMATICS

Construction of an annotated corpus to support biomedical information extraction

(2009) Paul Thompson et al.   BMC BIOINFORMATICS

Inter-species normalization of gene mentions with GNAT

(2008) J. Hakenberg et al.   BIOINFORMATICS

Corpus annotation for mining biomedical events from literature

(2008) Jin-Dong Kim et al.   BMC BIOINFORMATICS

The BioScope corpus: biomedical texts annotated for uncertainty, negation and their scopes

(2008) Veronika Vincze et al.   BMC BIOINFORMATICS

Overview of BioCreative II gene normalization

(2008) Alexander A Morgan et al.   GENOME BIOLOGY

Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge

(2008) Martin Krallinger et al.   GENOME BIOLOGY