Article
Environmental Sciences
Hannes Reinwald, Julia Alvincz, Gabriela Salinas, Christoph Schafers, Henner Hollert, Sebastian Eilebrecht
Summary: This study characterized the transcriptomic responses to six insecticides in zebrafish embryos, aiming to identify biomarker candidates for specific modes of action. Abamectin showed the most unique signature related to lipid metabolic processes. Differentially expressed genes after imidacloprid exposure were primarily associated with immune system and inflammation. The findings provide insights into early molecular events in response to the analyzed modes of action.
Article
Biochemistry & Molecular Biology
Siting Lai, Ankita Kumari, Jixiang Liu, Yiyue Zhang, Wenqing Zhang, Kuangyu Yen, Jin Xu
Summary: The MTZ/NTR-mediated cell ablation system is widely used in biological studies, and in this research, two NTR substrates, Furazolidone and Ronidazole, were found to efficiently ablate target cells in zebrafish larvae. Ronidazole was identified as a superior prodrug to MTZ for the NTR system, especially for studying neuron regeneration in zebrafish larvae.
JOURNAL OF GENETICS AND GENOMICS
(2021)
Article
Biotechnology & Applied Microbiology
Prarthana Shankar, Ryan S. McClure, Katrina M. Waters, Robyn L. Tanguay
Summary: By analyzing a co-expression network, we identified distinct responses of zebrafish to FRCs and AHR2 Activators, with FRCs inducing a broader neurobehavioral response and AHR2 Activators centering in a region related to chemical stress responses. The study also revealed potential biomarkers of exposure and highlighted neurogenesis and regulation of vascular development as key pathways affected by these chemicals.
Article
Neurosciences
Michael Kalyn, Marc Ekker
Summary: In this study, cerebroventricular microinjections of MPTP in adult transgenic zebrafish resulted in reduced dopaminergic neurons, mitochondrial fragmentation, and activation of the pink1/parkin pathway. This led to transient locomotor and olfactory impairments in the animals, contributing to a better understanding of the impact of mitochondria on dopaminergic survivability.
FRONTIERS IN NEUROSCIENCE
(2021)
Article
Biology
Ke-Hsuan Wei, I-Ting Lin, Kaushik Chowdhury, Khai Lone Lim, Kuan-Ting Liu, Tai-Ming Ko, Yao-Ming Chang, Kai-Chien Yang, Shih-Lei (Ben) Lai
Summary: Zebrafish have a robust ability to regenerate their hearts, and the immune system plays a key role in this process. By comparing non-regenerative and regenerative hearts, researchers have identified diverse functions and interactions between macrophages and neutrophils, and identified unique resident macrophages that are necessary for zebrafish heart regeneration.
Article
Cell Biology
Chiara Santulli, Carlotta Bon, Elena De Cecco, Marta Codrich, Joanna Narkiewicz, Pietro Parisse, Fabio Perissinotto, Claudio Santoro, Francesca Persichetti, Giuseppe Legname, Stefano Espinoza, Stefano Gustincich
Summary: This study identifies the significant role of hemoglobin (Hb) in the pathogenesis of Parkinson's disease. Long-term overexpression of Hb leads to the loss of dopaminergic neurons and motor and cognitive impairments. Hb also triggers the formation of endogenous C-terminal truncated species of α-synuclein.
CELL DEATH & DISEASE
(2022)
Article
Neurosciences
David Pamies, Daphne Wiersma, Moriah E. Katt, Liang Zhao, Johannes Burtscher, Georgina Harris, Lena Smirnova, Peter C. Searson, Thomas Hartung, Helena T. Hogberg
Summary: Oxidative stress is closely related to brain aging and neurodegenerative diseases, especially in Parkinson's disease. This study used a human brain 3D model (BrainSpheres) to investigate the effects of different oxidative stress-inducing compounds on dopaminergic neurons, and found that these compounds caused molecular deficits and neuronal loss.
NEUROBIOLOGY OF DISEASE
(2022)
Article
Biochemistry & Molecular Biology
Cheng-Yung Lin, Hsiang-Chien Tseng, Yu-Rong Chu, Chia-Lun Wu, Po-Hsiang Zhang, Huai-Jen Tsai
Summary: Pgk1 promotes the survival of dopamine-producing cells and improves locomotion, and its effects are time- and dose-dependent, independent of the energy-supplying function of intracellular Pgk1.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2022)
Article
Cell Biology
Holly A. Rutherford, Amy Clarke, Emily V. Chambers, Jessica J. Petts, Euan G. Carson, Hannah M. Isles, Alejandra Duque-Jaramillo, Stephen A. Renshaw, Jean-Pierre Levraud, Noemie Hamilton
Summary: In this study, the researchers identified eight copies of the zebrafish endogenous retrovirus zferv and created the first in vivo ERV reporter line. Through live imaging, flow cytometry, and single-cell RNA sequencing, they found that zferv expression was localized in early T cells and neurons. This new tool provides insights into the function of ERVs in health and diseases.
DISEASE MODELS & MECHANISMS
(2022)
Article
Cell Biology
Subham Dasgupta, Cheryl L. Dunham, Lisa Truong, Michael T. Simonich, Christopher M. Sullivan, Robyn L. Tanguay
Summary: The research demonstrated that different FRCs can lead to widespread disruption in mRNA and miR expression, with neurodevelopment being a major affected biological process that is also related to behavioral deficits. Several mRNAs and miRs showed differential expression common to multiple FRCs, with common miRs predicted to regulate a network of differentially expressed genes with diverse functions.
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY
(2021)
Article
Clinical Neurology
Janja Bozic, Helena Motaln, Anja Pucer Janez, Lara Markic, Priyanka Tripathi, Alfred Yamoah, Eleonora Aronica, Youn-Bok Lee, Raphael Heilig, Roman Fischer, Andrew J. Thompson, Anand Goswami, Boris Rogelj
Summary: Repeat expansions in the C9orf72 gene are a common cause of amyotrophic lateral sclerosis and frontotemporal lobar degeneration. In this study, the interactions between the dipeptide repeat proteins and their target partners were investigated. The results showed that these interactions are involved in various cellular processes, including protein translation, signal transduction, protein degradation, amide metabolism, and RNA binding. The study also demonstrated the sequestration of VCP by polyGA aggregates, leading to alterations in autophagy processes.
Article
Genetics & Heredity
Marcus Keatinge, Themistoklis M. Tsarouchas, Tahimina Munir, Nicola J. Porter, Juan Larraz, Davide Gianni, Hui-Hsin Tsai, Catherina G. Becker, David A. Lyons, Thomas Becker
Summary: Through a rapid in vivo phenotypic screen, researchers identified macrophage-related genes that promote regeneration in zebrafish after spinal cord injury. Disruption of 10 potentially related genes impaired axonal regeneration, with 4 stable mutants validating the approach.
Article
Medicine, Research & Experimental
Ana -Maria Oprisoreanu, Fari Ryan, Claire Richmond, Yuliya Dzekhtsiarova, Neil O. Carragher, Thomas Becker, Samuel David, Catherina G. Becker
Summary: Prolonged inflammation after spinal cord injury is detrimental to recovery. We designed a rapid drug screening paradigm in larval zebrafish and tested hit compounds in a mouse spinal cord injury model to find pharmacological modulators of inflammation response. Our screen revealed H2 receptor signaling as a promising target for future therapeutic interventions in spinal cord injury.
Article
Biochemistry & Molecular Biology
Bala Murali Krishna Vasamsetti, Kyongmi Chon, Chang-Young Yoon, Juyeong Kim, Ji-Yeong Choi, Sojeong Hwang, Kyeong-Hun Park
Summary: In this study, a zebrafish model was used to investigate the molecular pathways associated with the developmental toxicity of Etridiazole. The analysis of the transcriptome revealed differentially expressed genes related to sensory perception, visual perception, organ development, and visual system development, as well as involvement in various signaling pathways.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2023)
Article
Environmental Sciences
Christian I. Rude, Lane G. Tidwell, Susan C. Tilton, Katrina M. Waters, Kim A. Anderson, Robyn L. Tanguay
Summary: Passive sampling device (PSD) with developmental toxicity assays in zebrafish can effectively detect the whole mixture toxicity of bioavailable non-polar organics in environmental sites. By incorporating RNA-Seq, this study investigated the toxicity of PSD extracts from two locations in Portland Harbor Superfund Site on zebrafish embryos. The results showed that RM 6.5W had higher concentrations of PAHs and exhibited higher toxicity, while the gene expression profiles were similar between the two extracts.