A Novel Protein Kinase-Like Domain in a Selenoprotein, Widespread in the Tree of Life

Identification ofVibrio choleraeType III Secretion System Effector Proteins

(2011) Ashfaqul Alam et al.   INFECTION AND IMMUNITY

Too many roads not taken

(2011) Aled M. Edwards et al.   NATURE

Pathogenomics of Xanthomonas: understanding bacterium–plant interactions

(2011) Robert P. Ryan et al.   NATURE REVIEWS MICROBIOLOGY

The WNKs: Atypical Protein Kinases With Pleiotropic Actions

(2011) James A. McCormick et al.   PHYSIOLOGICAL REVIEWS

The Escherichia coli BtuE Protein Functions as a Resistance Determinant against Reactive Oxygen Species

(2011) Felipe A. Arenas et al.   PLoS One

DUFs: families in search of function

(2010) Alex Bateman et al.   Acta Crystallographica Section F-Structural Biology and Crystallization Communications

Structural classification of proteins and structural genomics: new insights into protein folding and evolution

(2010) Antonina Andreeva et al.   Acta Crystallographica Section F-Structural Biology and Crystallization Communications

SelK is a novel ER stress-regulated protein and protects HepG2 cells from ER stress agent-induced apoptosis

(2010) Shaoqing Du et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

The Escherichia coli btuE gene, encodes a glutathione peroxidase that is induced under oxidative stress conditions

(2010) Felipe A. Arenas et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Influence of SelS gene silence on β-Mercaptoethanol-mediated endoplasmic reticulum stress and cell apoptosis in HepG2 cells

(2010) Shaoqing Du et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

A widespread peroxiredoxin-like domain present in tumor suppression- and progression-implicated proteins.

(2010) Krzysztof Pawlowski et al.   BMC GENOMICS

Bacteriocin synthesis in uropathogenic and commensal Escherichia coli: colicin E1 is a potential virulence factor

(2010) David Šmajs et al.   BMC MICROBIOLOGY

The challenge of annotating protein sequences: The tale of eight domains of unknown function in Pfam

(2010) Nalin C.W. Goonesekere et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Pseudokinases-remnants of evolution or key allosteric regulators?

(2010) Elton Zeqiraj et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Selenoproteins—What unique properties can arise with selenocysteine in place of cysteine?

(2010) Elias S.J. Arnér   EXPERIMENTAL CELL RESEARCH

The Phosphoproteome of the Minimal BacteriumMycoplasma pneumoniae

(2010) Sebastian R. Schmidl et al.   MOLECULAR & CELLULAR PROTEOMICS

A virulent parent with probiotic progeny: comparative genomics of Escherichia coli strains CFT073, Nissle 1917 and ABU 83972

(2010) Rebecca Munk Vejborg et al.   MOLECULAR GENETICS AND GENOMICS

The (un)targeted cancer kinome

(2010) Oleg Fedorov et al.   Nature Chemical Biology

ErbB3/HER3 intracellular domain is competent to bind ATP and catalyze autophosphorylation

(2010) Fumin Shi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Selenoprotein P protects cells from lipid hydroperoxides generated by 15-LOX-1

(2010) Colleen Rock et al.   PROSTAGLANDINS LEUKOTRIENES AND ESSENTIAL FATTY ACIDS

An enriched structural kinase database to enable kinome-wide structure-based analyses and drug discovery

(2010) Natasja Brooijmans et al.   PROTEIN SCIENCE

From complete genome sequence to ‘complete’ understanding?

(2010) Michael Y. Galperin et al.   TRENDS IN BIOTECHNOLOGY

The origin and early evolution of eukaryotes in the light of phylogenomics

(2010) Eugene V Koonin   GENOME BIOLOGY

Mitochondrial kinases in cell signaling: Facts and perspectives☆

(2009) Valeria G. Antico Arciuch et al.   ADVANCED DRUG DELIVERY REVIEWS

Isolation and Characterization of Two Members of the Siderophore-Microcin Family, Microcins M and H47

(2009) G. Vassiliadis et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

The Current Status of Drug Discovery Against the Human Kinome

(2009) Richard M. Eglen et al.   ASSAY AND DRUG DEVELOPMENT TECHNOLOGIES

In vivo protein tyrosine nitration in S. cerevisiae: Identification of tyrosine-nitrated proteins in mitochondria

(2009) Arindam Bhattacharjee et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Functions and evolution of selenoprotein methionine sulfoxide reductases

(2009) Byung Cheon Lee et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

Focus on mammalian thioredoxin reductases — Important selenoproteins with versatile functions

(2009) Elias S.J. Arnér   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

Defining the conserved internal architecture of a protein kinase

(2009) Alexandr P. Kornev et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Genome reannotation of Escherichia coli CFT073 with new insights into virulence

(2009) Chengwei Luo et al.   BMC GENOMICS

Protein structure prediction: when is it useful?

(2009) Yang Zhang   CURRENT OPINION IN STRUCTURAL BIOLOGY

High abundance of virulence gene homologues in marine bacteria

(2009) Olof P. Persson et al.   ENVIRONMENTAL MICROBIOLOGY

The oligomeric conformation of peroxiredoxins links redox state to function

(2009) Sergio Barranco-Medina et al.   FEBS LETTERS

The Functional Role of a Conserved Loop in EAL Domain-Based Cyclic di-GMP-Specific Phosphodiesterase

(2009) F. Rao et al.   JOURNAL OF BACTERIOLOGY

Sequence-Specific Binding to a Subset of IscR-Regulated Promoters Does Not Require IscR Fe–S Cluster Ligation

(2009) A.D. Nesbit et al.   JOURNAL OF MOLECULAR BIOLOGY

Recent insight into the pathogenicity mechanisms of the emergent pathogen Photorhabdus asymbiotica

(2009) Sónia C.P. Costa et al.   MICROBES AND INFECTION

Microcins and urovirulence in Escherichia coli

(2009) María F. Azpiroz et al.   MICROBIAL PATHOGENESIS

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

(2009) Dongying Wu et al.   NATURE

The integrated microbial genomes system: an expanding comparative analysis resource

(2009) Victor M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

Fur controls iron homeostasis and oxidative stress defense in the oligotrophic alpha-proteobacterium Caulobacter crescentus

(2009) José F. da Silva Neto et al.   NUCLEIC ACIDS RESEARCH

MicrobesOnline: an integrated portal for comparative and functional genomics

(2009) P. S. Dehal et al.   NUCLEIC ACIDS RESEARCH

Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae

(2009) J. Chun et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Insights into the catalytic mechanism of the Bcp family: Functional and structural analysis of Bcp1 fromSulfolobus solfataricus

(2009) Katia D'Ambrosio et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Challenges and Opportunities in Defining the Essential Cancer Kinome

(2009) B. D. Manning   Science Signaling

Pseudokinases: Functional Insights Gleaned from Structure

(2009) Alexandr P. Kornev et al.   STRUCTURE

Structure of the Pseudokinase VRK3 Reveals a Degraded Catalytic Site, a Highly Conserved Kinase Fold, and a Putative Regulatory Binding Site

(2009) Eric D. Scheeff et al.   STRUCTURE

Exploration of Uncharted Regions of the Protein Universe

(2009) Lukasz Jaroszewski et al.   PLOS BIOLOGY

An Atlas of the Thioredoxin Fold Class Reveals the Complexity of Function-Enabling Adaptations

(2009) Holly J. Atkinson et al.   PLoS Computational Biology

Cellular Defenses against Superoxide and Hydrogen Peroxide

(2008) James A. Imlay   Annual Review of Biochemistry

Investigations of the MceIJ-Catalyzed Posttranslational Modification of the Microcin E492 C-Terminus: Linkage of Ribosomal and Nonribosomal Peptides To Form “Trojan Horse” Antibiotics†

(2008) Elizabeth M. Nolan et al.   BIOCHEMISTRY

Reactive oxygen species generation is modulated by mitochondrial kinases: Correlation with mitochondrial antioxidant peroxidases in rat tissues

(2008) Ana Paula S.A. Santiago et al.   BIOCHIMIE

GeneChaser: Identifying all biological and clinical conditions in which genes of interest are differentially expressed

(2008) Rong Chen et al.   BMC BIOINFORMATICS

MetaMQAP: A meta-server for the quality assessment of protein models

(2008) Marcin Pawlowski et al.   BMC BIOINFORMATICS

Rethinking Pseudokinases

(2008) Natarajan Kannan et al.   CELL

Oxidant-Responsive Induction of the suf Operon, Encoding a Fe-S Assembly System, through Fur and IscR in Escherichia coli

(2008) K.-C. Lee et al.   JOURNAL OF BACTERIOLOGY

Insights into Plant Cell Wall Degradation from the Genome Sequence of the Soil Bacterium Cellvibrio japonicus

(2008) R. T. DeBoy et al.   JOURNAL OF BACTERIOLOGY

An Assessment of the Impacts of Molecular Oxygen on the Evolution of Proteomes

(2008) S. Vieira-Silva et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogeny.fr: robust phylogenetic analysis for the non-specialist

(2008) A. Dereeper et al.   NUCLEIC ACIDS RESEARCH

The Jpred 3 secondary structure prediction server

(2008) C. Cole et al.   NUCLEIC ACIDS RESEARCH

Kinomer v. 1.0: a database of systematically classified eukaryotic protein kinases

(2008) D. M. A. Martin et al.   NUCLEIC ACIDS RESEARCH

NCBI GEO: archive for high-throughput functional genomic data

(2008) T. Barrett et al.   NUCLEIC ACIDS RESEARCH

EcoCyc: A comprehensive view of Escherichia coli biology

(2008) I. M. Keseler et al.   NUCLEIC ACIDS RESEARCH

Conserved herpesvirus protein kinases

(2007) Edward Gershburg et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS