Deep transcriptome sequencing of rhizome and aerial-shoot in Sorghum propinquum

Genetic variation and expression diversity between grain and sweet sorghum lines

(2013) Shu-Ye Jiang et al.   BMC GENOMICS

Genome-Wide Landscape of Alternative Splicing Events in Brachypodium distachyon

(2013) B. Walters et al.   DNA RESEARCH

Global transcriptome analysis reveals distinct expression among duplicated genes during sorghum-Bipolaris sorghicola interaction

(2012) Hiroshi Mizuno et al.   BMC PLANT BIOLOGY

Post-translational regulation of WRKY transcription factors in plant immunity

(2012) Nobuaki Ishihama et al.   CURRENT OPINION IN PLANT BIOLOGY

Genome-wide Transcription Factor Gene Prediction and their Expressional Tissue-Specificities in MaizeF

(2012) Yi Jiang et al.   Journal of Integrative Plant Biology

Targeted mapping of quantitative trait locus regions for rhizomatousness in chromosome SBI-01 and analysis of overwintering in a Sorghum bicolor × S. propinquum population

(2012) Jacob D. Washburn et al.   MOLECULAR BREEDING

Proteomic rewiring through transcriptomic diversity

(2012) Darren J. Burgess   NATURE REVIEWS GENETICS

S-adenosyl-l-methionine usage during climacteric ripening of tomato in relation to ethylene and polyamine biosynthesis and transmethylation capacity

(2012) Bram Van de Poel et al.   PHYSIOLOGIA PLANTARUM

The Florigen Genes FT and TSF Modulate Lateral Shoot Outgrowth in Arabidopsis thaliana

(2012) Kazuhisa Hiraoka et al.   PLANT AND CELL PHYSIOLOGY

ArabidopsisPYR/PYL/RCAR Receptors Play a Major Role in Quantitative Regulation of Stomatal Aperture and Transcriptional Response to Abscisic Acid

(2012) Miguel Gonzalez-Guzman et al.   PLANT CELL

Characterizing Regulatory and Functional Differentiation between Maize Mesophyll and Bundle Sheath Cells by Transcriptomic Analysis

(2012) Y.-M. Chang et al.   PLANT PHYSIOLOGY

Effects of Drought on Gene Expression in Maize Reproductive and Leaf Meristem Tissue Revealed by RNA-Seq

(2012) A. Kakumanu et al.   PLANT PHYSIOLOGY

ERF5 and ERF6 Play Redundant Roles as Positive Regulators of JA/Et-Mediated Defense against Botrytis cinerea in Arabidopsis

(2012) Caroline S. Moffat et al.   PLoS One

Alternative splicing in plants – coming of age

(2012) Naeem H. Syed et al.   TRENDS IN PLANT SCIENCE

AUX/LAX family of auxin influx carriers—an overview

(2012) Ranjan Swarup et al.   Frontiers in Plant Science

Functional annotation of the transcriptome of Sorghum bicolor in response to osmotic stress and abscisic acid

(2011) Diana V Dugas et al.   BMC GENOMICS

Identification of rhizome-specific genes by genome-wide differential expression Analysis in Oryza longistaminata

(2011) Fengyi Hu et al.   BMC PLANT BIOLOGY

Sweet sorghum as a model system for bioenergy crops

(2011) Martín Calviño et al.   CURRENT OPINION IN BIOTECHNOLOGY

A jacalin-related lectin-like gene in wheat is a component of the plant defence system

(2011) Yang Xiang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Ethylene-Responsive Element-Binding Factor 5, ERF5, Is Involved in Chitin-Induced Innate Immunity Response

(2011) Geon Hui Son et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Arabidopsis ORGAN SIZE RELATED1 regulates organ growth and final organ size in orchestration with ARGOS and ARL

(2011) Guanping Feng et al.   NEW PHYTOLOGIST

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

(2011) Chen Xie et al.   NUCLEIC ACIDS RESEARCH

Unique Defense Strategy by the Endoplasmic Reticulum Body in Plants

(2011) K. Yamada et al.   PLANT AND CELL PHYSIOLOGY

Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa

(2011) Pavana J. Hiremath et al.   PLANT BIOTECHNOLOGY JOURNAL

VASCULAR-RELATED NAC-DOMAIN 7 directly regulates the expression of a broad range of genes for xylem vessel formation

(2011) Masatoshi Yamaguchi et al.   PLANT JOURNAL

BBX32, an Arabidopsis B-Box Protein, Functions in Light Signaling by Suppressing HY5-Regulated Gene Expression and Interacting with STH2/BBX21

(2011) H. E. Holtan et al.   PLANT PHYSIOLOGY

The AP2/ERF Transcription Factor AtERF73/HRE1 Modulates Ethylene Responses during Hypoxia in Arabidopsis

(2011) C.-Y. Yang et al.   PLANT PHYSIOLOGY

Extensive changes to alternative splicing patterns following allopolyploidy in natural and resynthesized polyploids

(2011) R. Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diversification of P450 Genes During Land Plant Evolution

(2010) Masaharu Mizutani et al.   Annual Review of Plant Biology

RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

(2010) Andrew J Severin et al.   BMC PLANT BIOLOGY

Cytochrome P450 metabolizing fatty acids in plants: characterization and physiological roles

(2010) Franck Pinot et al.   FEBS Journal

Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq

(2010) T. Lu et al.   GENOME RESEARCH

Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome

(2010) G. Zhang et al.   GENOME RESEARCH

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

PSEUDO-RESPONSE REGULATORS 9, 7, and 5 Are Transcriptional Repressors in the Arabidopsis Circadian Clock

(2010) N. Nakamichi et al.   PLANT CELL

Expression and Functional Analyses of EXO70 Genes in Arabidopsis Implicate Their Roles in Regulating Cell Type-Specific Exocytosis

(2010) S. Li et al.   PLANT PHYSIOLOGY

Defining the boundaries: structure and function of LOB domain proteins

(2010) Christine Majer et al.   TRENDS IN PLANT SCIENCE

Mechanism of Auxin-Regulated Gene Expression in Plants

(2009) Elisabeth J. Chapman et al.   Annual Review of Genetics

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Characterization of WRKY co-regulatory networks in rice and Arabidopsis

(2009) Stefano Berri et al.   BMC PLANT BIOLOGY

LATERAL ORGAN FUSION1 and LATERAL ORGAN FUSION2 function in lateral organ separation and axillary meristem formation in Arabidopsis

(2009) D.-K. Lee et al.   DEVELOPMENT

Transcript profiling reveals diverse roles of auxin-responsive genes during reproductive development and abiotic stress in rice

(2009) Mukesh Jain et al.   FEBS Journal

Genome-wide mapping of alternative splicing in Arabidopsis thaliana

(2009) S. A. Filichkin et al.   GENOME RESEARCH

The Sorghum bicolor genome and the diversification of grasses

(2009) Andrew H. Paterson et al.   NATURE

A Pivotal Role of the Basic Leucine Zipper Transcription Factor bZIP53 in the Regulation of Arabidopsis Seed Maturation Gene Expression Based on Heterodimerization and Protein Complex Formation

(2009) R. Alonso et al.   PLANT CELL

The WUSCHEL-Related Homeobox Gene WOX11 Is Required to Activate Shoot-Borne Crown Root Development in Rice

(2009) Y. Zhao et al.   PLANT CELL

A role for circadian evening elements in cold-regulated gene expression in Arabidopsis

(2009) Michael D. Mikkelsen et al.   PLANT JOURNAL

Comprehensive sequence and expression profile analysis of Hsp20 gene family in rice

(2009) Yidan Ouyang et al.   PLANT MOLECULAR BIOLOGY

Arabidopsis IAR4 Modulates Auxin Response by Regulating Auxin Homeostasis

(2009) M. Quint et al.   PLANT PHYSIOLOGY

AGAMOUS Controls GIANT KILLER, a Multifunctional Chromatin Modifier in Reproductive Organ Patterning and Differentiation

(2009) Kian-Hong Ng et al.   PLOS BIOLOGY

Bio-Fuel Crops Research for Energy Security and Rural Development in Developing Countries

(2008) Belum V. S. Reddy et al.   BioEnergy Research

SOAP: short oligonucleotide alignment program

(2008) R. Li et al.   BIOINFORMATICS

An extensive (co-)expression analysis tool for the cytochrome P450 superfamily in Arabidopsis thaliana

(2008) Jürgen Ehlting et al.   BMC PLANT BIOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Arabidopsis WRKY38 and WRKY62 Transcription Factors Interact with Histone Deacetylase 19 in Basal Defense

(2008) K.-C. Kim et al.   PLANT CELL

Histone Modifications and Expression of Light-Regulated Genes in Arabidopsis Are Cooperatively Influenced by Changing Light Conditions

(2008) L. Guo et al.   PLANT PHYSIOLOGY

Identification of Negative cis-Acting Elements in Response to Copper in the Chloroplastic Iron Superoxide Dismutase Gene of the Moss Barbula unguiculata

(2008) M. Nagae et al.   PLANT PHYSIOLOGY

Global Characterization of Cell-Specific Gene Expression through Fluorescence-Activated Sorting of Nuclei

(2008) C. Zhang et al.   PLANT PHYSIOLOGY

GRASSIUS: A Platform for Comparative Regulatory Genomics across the Grasses

(2008) A. Yilmaz et al.   PLANT PHYSIOLOGY

Conserved Daily Transcriptional Programs in Carica papaya

(2008) Anna Zdepski et al.   Tropical Plant Biology