Genetic and genomic approaches for R-gene mediated disease resistance in tomato: retrospects and prospects

Unpredictability of metabolism—the key role of metabolomics science in combination with next-generation genome sequencing

(2011) Wolfram Weckwerth   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Genome-wide analysis of clustering patterns and flanking characteristics for plant microRNA genes

(2011) Meng Zhou et al.   FEBS Journal

MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs

(2011) J. Zhai et al.   GENES & DEVELOPMENT

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

TOMATOMA: A Novel Tomato Mutant Database Distributing Micro-Tom Mutant Collections

(2011) Takeshi Saito et al.   PLANT AND CELL PHYSIOLOGY

Application of proteomics to investigate stress-induced proteins for improvement in crop protection

(2011) Amber Afroz et al.   PLANT CELL REPORTS

Differential Tomato Transcriptomic Responses Induced by Pepino Mosaic Virus Isolates with Differential Aggressiveness

(2011) I. M. Hanssen et al.   PLANT PHYSIOLOGY

Systems Biology of Tomato Fruit Development: Combined Transcript, Protein, and Metabolite Analysis of Tomato Transcription Factor ( nor, rin ) and Ethylene Receptor ( Nr ) Mutants Reveals Novel Regulatory Interactions

(2011) Sonia Osorio et al.   PLANT PHYSIOLOGY

Genetic diversity and population structure in the tomato-like nightshades Solanum lycopersicoides and S. sitiens

(2010) Elena Albrecht et al.   ANNALS OF BOTANY

Quantitative Disease Resistance and Quantitative Resistance Loci in Breeding

(2010) Dina A. St.Clair   Annual Review of Phytopathology

Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics

(2010) Koh Aoki et al.   BMC GENOMICS

SNP Discovery and Linkage Map Construction in Cultivated Tomato

(2010) K. Shirasawa et al.   DNA RESEARCH

Potato R1 resistance gene confers resistance against Phytophthora infestans in transgenic tomato plants

(2010) Luigi Faino et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Mapping and linkage disequilibrium analysis with a genome-wide collection of SNPs that detect polymorphism in cultivated tomato

(2010) Matthew D. Robbins et al.   JOURNAL OF EXPERIMENTAL BOTANY

Biological invasion of European tomato crops by Tuta absoluta: ecology, geographic expansion and prospects for biological control

(2010) Nicolas Desneux et al.   JOURNAL OF PEST SCIENCE

Emerging Viral Diseases of Tomato Crops

(2010) Inge M. Hanssen et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Target-enrichment strategies for next-generation sequencing

(2010) Lira Mamanova et al.   NATURE METHODS

Improving the flavor of fresh fruits: genomics, biochemistry, and biotechnology

(2010) Harry J. Klee   NEW PHYTOLOGIST

Tomato Functional Genomics Database: a comprehensive resource and analysis package for tomato functional genomics

(2010) Z. Fei et al.   NUCLEIC ACIDS RESEARCH

Genomics and Bioinformatics Resources for Crop Improvement

(2010) K. Mochida et al.   PLANT AND CELL PHYSIOLOGY

What can next generation sequencing do for you? Next generation sequencing as a valuable tool in plant research

(2010) A. Bräutigam et al.   PLANT BIOLOGY

Mass spectrometry screening reveals widespread diversity in trichome specialized metabolites of tomato chromosomal substitution lines

(2010) Anthony Schilmiller et al.   PLANT JOURNAL

ORTom: a multi-species approach based on conserved co-expression to identify putative functional relationships among genes in tomato

(2010) Laura Miozzi et al.   PLANT MOLECULAR BIOLOGY

Analysis of cell wall proteins regulated in stem of susceptible and resistant tomato species after inoculation with Ralstonia solanacearum: a proteomic approach

(2010) Diwakar Dahal et al.   PLANT MOLECULAR BIOLOGY

Computational predicting novel MicroRNAs in tomato and validating with RT-PCR

(2010) Fu-lei Luan et al.   RUSSIAN JOURNAL OF PLANT PHYSIOLOGY

Effector-triggered immunity mediated by the Pto kinase

(2010) Chang-Sik Oh et al.   TRENDS IN PLANT SCIENCE

Roles of Plant Small RNAs in Biotic Stress Responses

(2009) Virginia Ruiz-Ferrer et al.   Annual Review of Plant Biology

Oligonucleotide array discovery of polymorphisms in cultivated tomato (Solanum lycopersicum L.) reveals patterns of SNP variation associated with breeding

(2009) Sung-Chur Sim et al.   BMC GENOMICS

Genomics of Fungal Disease Resistance in Tomato

(2009) Dilip Panthee et al.   CURRENT GENOMICS

A new genetic linkage map of tomato based on a Solanum lycopersicum × S. pimpinellifolium RIL population displaying locations of candidate pathogen response genes

(2009) Hamid Ashrafi et al.   GENOME

Development of a locus-specific, co-dominant SCAR marker for assisted-selection of the Sw-5 (Tospovirus resistance) gene cluster in a wide range of tomato accessions

(2009) Érico C. Dianese et al.   MOLECULAR BREEDING

Comparative Analysis of Expression Profiles in Shoots and Roots of Tomato Systemically Infected byTomato spotted wilt virusReveals Organ-Specific Transcriptional Responses

(2009) Marco Catoni et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Tomato Transcriptional Responses to a Foliar and a Vascular Fungal Pathogen Are Distinct

(2009) H. Peter van Esse et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Microdroplet-based PCR enrichment for large-scale targeted sequencing

(2009) Ryan Tewhey et al.   NATURE BIOTECHNOLOGY

PRGdb: a bioinformatics platform for plant resistance gene analysis

(2009) Walter Sanseverino et al.   NUCLEIC ACIDS RESEARCH

Comparative proteomic analysis of bacterial wilt susceptible and resistant tomato cultivars

(2009) Amber Afroz et al.   PEPTIDES

Metabolic response of tomato leaves upon different plant–pathogen interactions

(2009) M. Pilar López-Gresa et al.   PHYTOCHEMICAL ANALYSIS

Genetic Dissection of Verticillium Wilt Resistance Mediated by Tomato Ve1

(2009) E. F. Fradin et al.   PLANT PHYSIOLOGY

To Nibble at Plant Resistance Proteins

(2009) F. L. W. Takken et al.   SCIENCE

Plant systems for recognition of pathogen-associated molecular patterns

(2009) Sandra Postel et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Exploring the Natural Biodiversity of Potato for Late Blight Resistance

(2009) Roel Hoekstra   POTATO RESEARCH

Comprehensive Resources for Tomato Functional Genomics Based on the Miniature Model Tomato Micro-Tom

(2008) C. Matsukura et al.   CURRENT GENOMICS

Classification and phylogenetic relationships in Solanum section Lycopersicon based on AFLP and two nuclear gene sequences

(2008) Elena Zuriaga et al.   GENETIC RESOURCES AND CROP EVOLUTION

Tomato Susceptibility to Root-Knot Nematodes Requires an Intact Jasmonic Acid Signaling Pathway

(2008) Kishor K. Bhattarai et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

AthaMap, integrating transcriptional and post-transcriptional data

(2008) L. Bulow et al.   NUCLEIC ACIDS RESEARCH

Expression of an oxalate oxidase gene in tomato and severity of disease caused by Botrytis cinerea and Sclerotinia sclerotiorum

(2008) A. Walz et al.   PLANT PATHOLOGY

Gene Expression and Metabolism in Tomato Fruit Surface Tissues

(2008) S. Mintz-Oron et al.   PLANT PHYSIOLOGY

Tomato Transcriptional Changes in Response to Clavibacter michiganensis subsp. michiganensis Reveal a Role for Ethylene in Disease Development

(2008) V. Balaji et al.   PLANT PHYSIOLOGY

Allele mining in Solanum: conserved homologues of Rpi-blb1 are identified in Solanum stoloniferum

(2008) Miqia Wang et al.   THEORETICAL AND APPLIED GENETICS

Metabolomics-assisted breeding: a viable option for crop improvement?

(2008) Alisdair R. Fernie et al.   TRENDS IN GENETICS