Gene regulatory networks for lignin biosynthesis in switchgrass (Panicum virgatum )

Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana

(2018) Shaowei Duan et al.   PLANT SCIENCE

Current Models for Transcriptional Regulation of Secondary Cell Wall Biosynthesis in Grasses

(2018) Xiaolan Rao et al.   Frontiers in Plant Science

Transgenic switchgrass (Panicum virgatum L.) targeted for reduced recalcitrance to bioconversion: a 2-year comparative analysis of field-grown lines modified for target gene or genetic element expression

(2017) Alexandru Dumitrache et al.   PLANT BIOTECHNOLOGY JOURNAL

Comparative cell-specific transcriptomics reveals differentiation of C4photosynthesis pathways in switchgrass and other C4lineages

(2016) Xiaolan Rao et al.   JOURNAL OF EXPERIMENTAL BOTANY

Overexpression ofSbMyb60impacts phenylpropanoid biosynthesis and alters secondary cell wall composition inSorghum bicolor

(2016) Erin D. Scully et al.   PLANT JOURNAL

Co-expression network analysis reveals transcription factors associated to cell wall biosynthesis in sugarcane

(2016) Savio Siqueira Ferreira et al.   PLANT MOLECULAR BIOLOGY

Downregulation of a UDP-Arabinomutase Gene in Switchgrass (Panicum virgatum L.) Results in Increased Cell Wall Lignin While Reducing Arabinose-Glycans

(2016) Jonathan D. Willis et al.   Frontiers in Plant Science

Learning from Co-expression Networks: Possibilities and Challenges

(2016) Elise A. R. Serin et al.   Frontiers in Plant Science

Combining enhanced biomass density with reduced lignin level for improved forage quality

(2015) Lina Gallego-Giraldo et al.   PLANT BIOTECHNOLOGY JOURNAL

The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63

(2015) Soichiro Noda et al.   PLANTA

NAC-MYB-based transcriptional regulation of secondary cell wall biosynthesis in land plants

(2015) Yoshimi Nakano et al.   Frontiers in Plant Science

Functional Characterization of NAC and MYB Transcription Factors Involved in Regulation of Biomass Production in Switchgrass (Panicum virgatum)

(2015) Ruiqin Zhong et al.   PLoS One

An Arabidopsis gene regulatory network for secondary cell wall synthesis

(2014) M. Taylor-Teeples et al.   NATURE

Secondary Cell Walls: Biosynthesis, Patterned Deposition and Transcriptional Regulation

(2014) Ruiqin Zhong et al.   PLANT AND CELL PHYSIOLOGY

Lignin Valorization: Improving Lignin Processing in the Biorefinery

(2014) A. J. Ragauskas et al.   SCIENCE

Elucidating gene function and function evolution through comparison of co-expression networks of plants

(2014) Bjoern O. Hansen et al.   Frontiers in Plant Science

Standardization of Switchgrass Sample Collection for Cell Wall and Biomass Trait Analysis

(2013) C. Frank Hardin et al.   BioEnergy Research

Identification of Transcription Factors Involved in Rice Secondary Cell Wall Formation

(2013) Ko Hirano et al.   PLANT AND CELL PHYSIOLOGY

Survey of Genes Involved in Rice Secondary Cell Wall Formation Through a Co-Expression Network

(2013) Ko Hirano et al.   PLANT AND CELL PHYSIOLOGY

A Genomics Approach to Deciphering Lignin Biosynthesis in Switchgrass

(2013) H. Shen et al.   PLANT CELL

Arabidopsis thalianabZIP44: a transcription factor affecting seed germination and expression of the mannanase-encoding geneAtMAN7

(2013) Raquel Iglesias-Fernández et al.   PLANT JOURNAL

Development of an integrated transcript sequence database and a gene expression atlas for gene discovery and analysis in switchgrass (Panicum virgatumL.)

(2013) Ji-Yi Zhang et al.   PLANT JOURNAL

Small open reading frames associated with morphogenesis are hidden in plant genomes

(2013) K. Hanada et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis

(2013) Hua Cassan-Wang et al.   Frontiers in Plant Science

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Differential analysis of gene regulation at transcript resolution with RNA-seq

(2012) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

MYB103 is required forFERULATE-5-HYDROXYLASEexpression and syringyl lignin biosynthesis in Arabidopsis stems

(2012) David Öhman et al.   PLANT JOURNAL

Co-expression of cell-wall related genes: new tools and insights

(2012) Colin Ruprecht et al.   Frontiers in Plant Science

On–Off Switches for Secondary Cell Wall Biosynthesis

(2011) Huan-Zhong Wang et al.   Molecular Plant

Functional characterization of the switchgrass (Panicum virgatum) R2R3-MYB transcription factor PvMYB4 for improvement of lignocellulosic feedstocks

(2011) Hui Shen et al.   NEW PHYTOLOGIST

Transcriptional Activation of Secondary Wall Biosynthesis by Rice and Maize NAC and MYB Transcription Factors

(2011) R. Zhong et al.   PLANT AND CELL PHYSIOLOGY

Gateway-compatible vectors for high-throughput gene functional analysis in switchgrass (Panicum virgatum L.) and other monocot species

(2011) David G.J. Mann et al.   PLANT BIOTECHNOLOGY JOURNAL

NAC domain function and transcriptional control of a secondary cell wall master switch

(2011) Huanzhong Wang et al.   PLANT JOURNAL

The Arabidopsis bZIP Gene AtbZIP63 Is a Sensitive Integrator of Transient Abscisic Acid and Glucose Signals

(2011) C. C. Matiolli et al.   PLANT PHYSIOLOGY

Transcriptional networks for lignin biosynthesis: more complex than we thought?

(2011) Qiao Zhao et al.   TRENDS IN PLANT SCIENCE

Large-Scale Co-Expression Approach to Dissect Secondary Cell Wall Formation Across Plant Species

(2011) Colin Ruprecht et al.   Frontiers in Plant Science

Plant cell wall polymers as precursors for biofuels

(2010) Markus Pauly et al.   CURRENT OPINION IN PLANT BIOLOGY

Syringyl lignin biosynthesis is directly regulated by a secondary cell wall master switch

(2010) Q. Zhao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mutation of WRKY transcription factors initiates pith secondary wall formation and increases stem biomass in dicotyledonous plants

(2010) H. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolutionary conservation of the transcriptional network regulating secondary cell wall biosynthesis

(2010) Ruiqin Zhong et al.   TRENDS IN PLANT SCIENCE

Developmental Control of Lignification in Stems of Lowland Switchgrass Variety Alamo and the Effects on Saccharification Efficiency

(2009) Hui Shen et al.   BioEnergy Research

QUBIC: a qualitative biclustering algorithm for analyses of gene expression data

(2009) Guojun Li et al.   NUCLEIC ACIDS RESEARCH

MYB83 Is a Direct Target of SND1 and Acts Redundantly with MYB46 in the Regulation of Secondary Cell Wall Biosynthesis in Arabidopsis

(2009) R. L. McCarthy et al.   PLANT AND CELL PHYSIOLOGY

MYB58 and MYB63 Are Transcriptional Activators of the Lignin Biosynthetic Pathway during Secondary Cell Wall Formation in Arabidopsis

(2009) J. Zhou et al.   PLANT CELL

Unique aspects of the grass cell wall

(2008) J VOGEL   CURRENT OPINION IN PLANT BIOLOGY