Transcriptome sequencing of different narrow-leafed lupin tissue types provides a comprehensive uni-gene assembly and extensive gene-based molecular markers

Comprehensive Transcriptome Assembly of Chickpea (Cicer arietinum L.) Using Sanger and Next Generation Sequencing Platforms: Development and Applications

(2014) Himabindu Kudapa et al.   PLoS One

New evidence of ancestral polyploidy in the Genistoid legume Lupinus angustifolius L. (narrow-leafed lupin)

(2014) Magdalena Kroc et al.   THEORETICAL AND APPLIED GENETICS

How a phosphorus-acquisition strategy based on carboxylate exudation powers the success and agronomic potential of lupines (Lupinus , Fabaceae)

(2013) Hans Lambers et al.   AMERICAN JOURNAL OF BOTANY

Comparative genomics of Lupinus angustifolius gene-rich regions: BAC library exploration, genetic mapping and cytogenetics

(2013) Michał Książkiewicz et al.   BMC GENOMICS

Ancient orphan crop joins modern era: gene-based SNP discovery and mapping in lentil

(2013) Andrew G Sharpe et al.   BMC GENOMICS

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Draft Genome Sequence, and a Sequence-Defined Genetic Linkage Map of the Legume Crop Species Lupinus angustifolius L

(2013) Huaan Yang et al.   PLoS One

The essential role of genetic resources in narrow-leafed lupin improvement

(2013) Jens D. Berger et al.   Crop & Pasture Science

Genome-Enabled Insights into Legume Biology

(2012) Nevin D. Young et al.   Annual Review of Plant Biology

Yellow lupin (Lupinus luteus L.) transcriptome sequencing: molecular marker development and comparative studies

(2012) Lorena B Parra-González et al.   BMC GENOMICS

Transcriptome sequencing of field pea and faba bean for discovery and validation of SSR genetic markers

(2012) Sukhjiwan Kaur et al.   BMC GENOMICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

An RNA-Seq Transcriptome Analysis of Orthophosphate-Deficient White Lupin Reveals Novel Insights into Phosphorus Acclimation in Plants

(2012) J. A. O'Rourke et al.   PLANT PHYSIOLOGY

Rapid development of molecular markers by next-generation sequencing linked to a gene conferring phomopsis stem blight disease resistance for marker-assisted selection in lupin (Lupinus angustifolius L.) breeding

(2012) Huaan Yang et al.   THEORETICAL AND APPLIED GENETICS

Break-crop benefits to wheat in Western Australia ? insights from over three decades of research

(2012) Mark Seymour et al.   Crop & Pasture Science

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Next generation DNA sequencing technology delivers valuable genetic markers for the genomic orphan legume species, Bituminaria bituminosa

(2011) María Pazos-Navarro et al.   BMC GENETICS

GC content around splice sites affects splicing through pre-mRNA secondary structures

(2011) Jing Zhang et al.   BMC GENOMICS

Development of genomic resources for the narrow-leafed lupin (Lupinus angustifolius): construction of a bacterial artificial chromosome (BAC) library and BAC-end sequencing

(2011) Ling-Ling Gao et al.   BMC GENOMICS

Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]

(2011) Sutapa Dutta et al.   BMC PLANT BIOLOGY

Gene-based SSR markers for common bean (Phaseolus vulgaris L.) derived from root and leaf tissue ESTs: an integration of the BMc series

(2011) Matthew W Blair et al.   BMC PLANT BIOLOGY

Identification and characterisation of seed storage protein transcripts from Lupinus angustifolius

(2011) Rhonda C Foley et al.   BMC PLANT BIOLOGY

How has narrow-leafed lupin changed in its 1st 40 years as an industrial, broad-acre crop? A G×E-based characterization of yield-related traits in Australian cultivars

(2011) J.D. Berger et al.   FIELD CROPS RESEARCH

Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa

(2011) Pavana J. Hiremath et al.   PLANT BIOTECHNOLOGY JOURNAL

Update on White Lupin Cluster Root Acclimation to Phosphorus Deficiency Update on Lupin Cluster Roots

(2011) L. Cheng et al.   PLANT PHYSIOLOGY

Domestication bottlenecks limit genetic diversity and constrain adaptation in narrow-leafed lupin (Lupinus angustifolius L.)

(2011) J. D. Berger et al.   THEORETICAL AND APPLIED GENETICS

Aligning a New Reference Genetic Map of Lupinus angustifolius with the Genome Sequence of the Model Legume, Lotus japonicus

(2010) M. N. Nelson et al.   DNA RESEARCH

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Effects of lupin-enriched foods on body composition and cardiovascular disease risk factors: a 12-month randomized controlled weight loss trial

(2010) R Belski et al.   INTERNATIONAL JOURNAL OF OBESITY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Rapid Genome-wide Single Nucleotide Polymorphism Discovery in Soybean and Rice via Deep Resequencing of Reduced Representation Libraries with the Illumina Genome Analyzer

(2010) Stéphane Deschamps et al.   Plant Genome

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Next-generation sequencing technologies and their implications for crop genetics and breeding

(2009) Rajeev K. Varshney et al.   TRENDS IN BIOTECHNOLOGY

Multiplex-Ready PCR: A new method for multiplexed SSR and SNP genotyping

(2008) Matthew J Hayden et al.   BMC GENOMICS

Two alternative recessive quantitative trait loci influence resistance to spring black stem and leaf spot in Medicago truncatula

(2008) Lars G Kamphuis et al.   BMC PLANT BIOLOGY

Development of sequence-specific PCR markers linked to the Tardus gene that reduces pod shattering in narrow-leafed lupin (Lupinus angustifolius L.)

(2008) Jeffrey G. Boersma et al.   MOLECULAR BREEDING