GC content around splice sites affects splicing through pre-mRNA secondary structures

Genome-wide measurement of RNA secondary structure in yeast

(2010) Michael Kertesz et al.   NATURE

Deciphering the splicing code

(2010) Yoseph Barash et al.   NATURE

Influence of secondary structure on recovery from pauses during early stages of RNA transcription

(2010) A. V. Klopper et al.   PHYSICAL REVIEW E

Predicting in vivo binding sites of RNA-binding proteins using mRNA secondary structure

(2010) X. Li et al.   RNA

mRNA Secondary Structures Fold Sequentially But Exchange Rapidly In Vivo

(2010) Elisabeth M. Mahen et al.   PLOS BIOLOGY

Modulation of alternative splicing by long-range RNA structures in Drosophila

(2009) Veronica A. Raker et al.   NUCLEIC ACIDS RESEARCH

Role of RNA structure in regulating pre-mRNA splicing

(2009) M. Bryan Warf et al.   TRENDS IN BIOCHEMICAL SCIENCES

Motif composition, conservation and condition-specificity of single and alternative transcription start sites in the Drosophila genome

(2009) Elizabeth A Rach et al.   GENOME BIOLOGY

Correlation between the secondary structure of pre-mRNA introns and the efficiency of splicing in Saccharomyces cerevisiae

(2008) Sanja Rogic et al.   BMC GENOMICS

Expression of 24,426 human alternative splicing events and predicted cis regulation in 48 tissues and cell lines

(2008) John C Castle et al.   NATURE GENETICS

Conserved RNA secondary structures promote alternative splicing

(2008) P. J. Shepard et al.   RNA

Splicing regulation: From a parts list of regulatory elements to an integrated splicing code

(2008) Z. Wang et al.   RNA