Extrinsic Noise Driven Phenotype Switching in a Self-Regulating Gene

DNA looping increases the range of bistability in a stochastic model of thelacgenetic switch

(2013) Tyler M Earnest et al.   PHYSICAL BIOLOGY

Impact of colored environmental noise on the extinction of a long-lived stochastic population: Role of the Allee effect

(2013) Eitan Y. Levine et al.   PHYSICAL REVIEW E

Slow Protein Fluctuations Explain the Emergence of Growth Phenotypes and Persistence in Clonal Bacterial Populations

(2013) Andrea Rocco et al.   PLoS One

Towards a statistical mechanics of cell fate decisions

(2012) Jordi Garcia-Ojalvo et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Using Gene Expression Noise to Understand Gene Regulation

(2012) B. Munsky et al.   SCIENCE

Decision Making in Living Cells: Lessons from a Simple System

(2011) Ido Golding   Annual Review of Biophysics

Cellular Decision Making and Biological Noise: From Microbes to Mammals

(2011) Gábor Balázsi et al.   CELL

Determining the Stability of Genetic Switches: Explicitly Accounting for mRNA Noise

(2011) Michael Assaf et al.   PHYSICAL REVIEW LETTERS

Effects of Input Noise on a Simple Biochemical Switch

(2011) Bo Hu et al.   PHYSICAL REVIEW LETTERS

Separating intrinsic from extrinsic fluctuations in dynamic biological systems

(2011) A. Hilfinger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Noise Contributions in an Inducible Genetic Switch: A Whole-Cell Simulation Study

(2011) Elijah Roberts et al.   PLoS Computational Biology

Kinetic paths, time scale, and underlying landscapes: A path integral framework to study global natures of nonequilibrium systems and networks

(2010) Jin Wang et al.   JOURNAL OF CHEMICAL PHYSICS

Functional roles for noise in genetic circuits

(2010) Avigdor Eldar et al.   NATURE

Extinction of metastable stochastic populations

(2010) Michael Assaf et al.   PHYSICAL REVIEW E

Noise Can Induce Bimodality in Positive Transcriptional Feedback Loops Without Bistability

(2010) T.-L. To et al.   SCIENCE

Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

(2010) Y. Taniguchi et al.   SCIENCE

Kinetics of Genetic Switching into the State of Bacterial Competence

(2009) Madeleine Leisner et al.   BIOPHYSICAL JOURNAL

Non-genetic heterogeneity of cells in development: more than just noise

(2009) S. Huang   DEVELOPMENT

Early-warning signals for critical transitions

(2009) Marten Scheffer et al.   NATURE

λ-prophage induction modeled as a cooperative failure mode of lytic repression

(2009) Nicholas Chia et al.   PHYSICAL REVIEW E

Switching rates of multistep reactions

(2009) Carlos Escudero et al.   PHYSICAL REVIEW E

Eliminating fast reactions in stochastic simulations of biochemical networks: A bistable genetic switch

(2008) Marco J. Morelli et al.   JOURNAL OF CHEMICAL PHYSICS

Colored extrinsic fluctuations and stochastic gene expression

(2008) Vahid Shahrezaei et al.   Molecular Systems Biology

How Colored Environmental Noise Affects Population Extinction

(2008) Alex Kamenev et al.   PHYSICAL REVIEW LETTERS