Noise Contributions in an Inducible Genetic Switch: A Whole-Cell Simulation Study

Structure of hibernating ribosomes studied by cryoelectron tomography in vitro and in situ

(2010) Julio O. Ortiz et al.   JOURNAL OF CELL BIOLOGY

Variability in gene expression underlies incomplete penetrance

(2010) Arjun Raj et al.   NATURE

Spatial organization of the flow of genetic information in bacteria

(2010) Paula Montero Llopis et al.   NATURE

Spatio-temporal correlations can drastically change the response of a MAPK pathway

(2010) K. Takahashi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

(2010) Y. Taniguchi et al.   SCIENCE

Diffusion, Crowding & Protein Stability in a Dynamic Molecular Model of the Bacterial Cytoplasm

(2010) Sean R. McGuffee et al.   PLoS Computational Biology

Single molecule tracking of quantum dot-labeled mRNAs in a cell nucleus

(2009) Yo Ishihama et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Flexibility in the Inducer Binding Region Is Crucial for Allostery in theEscherichia coliLactose Repressor

(2009) Jia Xu et al.   BIOCHEMISTRY

Comparison of Deterministic and Stochastic Models of the lac Operon Genetic Network

(2009) Michail Stamatakis et al.   BIOPHYSICAL JOURNAL

Quality Control of Cytoplasmic Membrane Proteins in Escherichia coli

(2009) Y. Akiyama   JOURNAL OF BIOCHEMISTRY

Stochastic Switching in Gene Networks Can Occur by a Single-Molecule Event or Many Molecular Steps

(2009) Paul J. Choi et al.   JOURNAL OF MOLECULAR BIOLOGY

Visual proteomics of the human pathogen Leptospira interrogans

(2009) Martin Beck et al.   NATURE METHODS

Universal architecture of bacterial chemoreceptor arrays

(2009) A. Briegel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Proteome Organization in a Genome-Reduced Bacterium

(2009) S. Kuhner et al.   SCIENCE

Models at the single cell level

(2009) Raymond Cheong et al.   Wiley Interdisciplinary Reviews-Systems Biology and Medicine

Coarse-Grained Molecular Simulation of Diffusion and Reaction Kinetics in a Crowded Virtual Cytoplasm

(2008) Douglas Ridgway et al.   BIOPHYSICAL JOURNAL

Nature, Nurture, or Chance: Stochastic Gene Expression and Its Consequences

(2008) Arjun Raj et al.   CELL

The stochastic nature of biochemical networks

(2008) Vahid Shahrezaei et al.   CURRENT OPINION IN BIOTECHNOLOGY

Three-dimensional analysis of the structure and ecology of a novel, ultra-small archaeon

(2008) Luis R Comolli et al.   ISME Journal

Reaction Brownian dynamics and the effect of spatial fluctuations on the gain of a push-pull network

(2008) Marco J. Morelli et al.   JOURNAL OF CHEMICAL PHYSICS

The diffusive influx and carrier efflux have a strong effect on the bistability of the lac operon in Escherichia coli

(2008) Jason T. Noel et al.   JOURNAL OF THEORETICAL BIOLOGY

Stochastic switching as a survival strategy in fluctuating environments

(2008) Murat Acar et al.   NATURE GENETICS

Super-resolution imaging in live Caulobacter crescentus cells using photoswitchable EYFP

(2008) Julie S Biteen et al.   NATURE METHODS

Analytical distributions for stochastic gene expression

(2008) V. Shahrezaei et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Stochastic Single-Molecule Event Triggers Phenotype Switching of a Bacterial Cell

(2008) P. J. Choi et al.   SCIENCE

Three-Dimensional Super-Resolution Imaging by Stochastic Optical Reconstruction Microscopy

(2008) B. Huang et al.   SCIENCE

Protein Translocation Across the Bacterial Cytoplasmic Membrane

(2007) Arnold J.M. Driessen et al.   Annual Review of Biochemistry

Bistable Behavior in a Model of the lac Operon in Escherichia coli with Variable Growth Rate

(2007) M. Santillán   BIOPHYSICAL JOURNAL