DNA looping increases the range of bistability in a stochastic model of thelacgenetic switch

FRET studies of a landscape of Lac repressor-mediated DNA loops

(2012) Aaron R. Haeusler et al.   NUCLEIC ACIDS RESEARCH

Sequence dependence of transcription factor-mediated DNA looping

(2012) Stephanie Johnson et al.   NUCLEIC ACIDS RESEARCH

Isolating intrinsic noise sources in a stochastic genetic switch

(2012) Jay M Newby   PHYSICAL BIOLOGY

Modeling Stochastic Dynamics in Biochemical Systems with Feedback Using Maximum Caliber

(2011) S. Pressé et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Determining the Stability of Genetic Switches: Explicitly Accounting for mRNA Noise

(2011) Michael Assaf et al.   PHYSICAL REVIEW LETTERS

Noise Contributions in an Inducible Genetic Switch: A Whole-Cell Simulation Study

(2011) Elijah Roberts et al.   PLoS Computational Biology

Dynamical fluctuations in biochemical reactions and cycles

(2010) S. Pressé et al.   PHYSICAL REVIEW E

Extinction of metastable stochastic populations

(2010) Michael Assaf et al.   PHYSICAL REVIEW E

Analysis of Stochastic Strategies in Bacterial Competence: A Master Equation Approach

(2010) Sandra H. Dandach et al.   PLoS Computational Biology

Comparison of Deterministic and Stochastic Models of the lac Operon Genetic Network

(2009) Michail Stamatakis et al.   BIOPHYSICAL JOURNAL

Stochastic Switching in Gene Networks Can Occur by a Single-Molecule Event or Many Molecular Steps

(2009) Paul J. Choi et al.   JOURNAL OF MOLECULAR BIOLOGY

Switching rates of multistep reactions

(2009) Carlos Escudero et al.   PHYSICAL REVIEW E

Transient analysis of stochastic switches and trajectories with applications to gene regulatory networks

(2008) B. Munsky et al.   IET Systems Biology

Eliminating fast reactions in stochastic simulations of biochemical networks: A bistable genetic switch

(2008) Marco J. Morelli et al.   JOURNAL OF CHEMICAL PHYSICS

Stochastic chemical kinetics and the total quasi-steady-state assumption: Application to the stochastic simulation algorithm and chemical master equation

(2008) Shev MacNamara et al.   JOURNAL OF CHEMICAL PHYSICS

Multiscale Modeling of Chemical Kinetics via the Master Equation

(2008) Shev MacNamara et al.   MULTISCALE MODELING & SIMULATION

Stochastic switching as a survival strategy in fluctuating environments

(2008) Murat Acar et al.   NATURE GENETICS

Transcriptional control of noise in gene expression

(2008) Álvaro Sánchez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Analytical distributions for stochastic gene expression

(2008) V. Shahrezaei et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Stochastic Single-Molecule Event Triggers Phenotype Switching of a Bacterial Cell

(2008) P. J. Choi et al.   SCIENCE