Unifying Vertical and Nonvertical Evolution: A Stochastic ARG-based Framework

Many-core algorithms for statistical phylogenetics

(2009) M. A. Suchard et al.   BIOINFORMATICS

Extended Newick: it is time for a standard representation of phylogenetic networks

(2009) Gabriel Cardona et al.   BMC BIOINFORMATICS

Darwinian evolution in the light of genomics

(2009) E. V. Koonin   NUCLEIC ACIDS RESEARCH

Simultaneous Bayesian gene tree reconstruction and reconciliation analysis

(2009) O. Akerborg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DRUG RESISTANCE: A 'Wimpy' Flu Strain Mysteriously Turns Scary

(2009) M. Enserink   SCIENCE

Importance sampling and the two-locus model with subdivided population structure

(2008) Robert C. Griffiths et al.   ADVANCES IN APPLIED PROBABILITY

Phylogenetic Inference Using Whole Genomes

(2008) Bruce Rannala et al.   Annual Review of Genomics and Human Genetics

StepBrothers: inferring partially shared ancestries among recombinant viral sequences

(2008) E. W. Bloomquist et al.   BIOSTATISTICS

Using supernetworks to distinguish hybridization from lineage-sorting

(2008) Barbara R Holland et al.   BMC EVOLUTIONARY BIOLOGY

Exploring contradictory phylogenetic relationships in yeasts

(2008) Qiong Wu et al.   FEMS YEAST RESEARCH

Rapid Evolution and the Importance of Recombination to the Gastroenteric Pathogen Campylobacter jejuni

(2008) D. J. Wilson et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bayesian inference of fine-scale recombination rates using population genomic data

(2008) Y. Wang et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Comparison of Phylogenetic Network Methods Using Computer Simulation

(2008) Steven M. Woolley et al.   PLoS One

Massive Horizontal Gene Transfer in Bdelloid Rotifers

(2008) E. A. Gladyshev et al.   SCIENCE

Comparison of Methods for Species-Tree Inference in the Sawfly Genus Neodiprion (Hymenoptera: Diprionidae)

(2008) Catherine R. Linnen et al.   SYSTEMATIC BIOLOGY

Hemiplasy: A New Term in the Lexicon of Phylogenetics

(2008) John C. Avise et al.   SYSTEMATIC BIOLOGY

Efficiency of Markov Chain Monte Carlo Tree Proposals in Bayesian Phylogenetics

(2008) Clemens Lakner et al.   SYSTEMATIC BIOLOGY

Detecting hybrid speciation in the presence of incomplete lineage sorting using gene tree incongruence: A model

(2008) Chen Meng et al.   THEORETICAL POPULATION BIOLOGY