SNP development for genetic diversity analysis in apricot

Genetic relationships between fruiting and flowering mei (Prunus mume) cultivars using SNP markers

(2016) X. Li et al.   JOURNAL OF HORTICULTURAL SCIENCE & BIOTECHNOLOGY

A Unique Mutation in a MYB Gene Cosegregates with the Nectarine Phenotype in Peach

(2014) Elisa Vendramin et al.   PLoS One

Detection of SNP and validation of a SFP InDel (deletion) in inverted repeat region of the Prunus species chloroplast genome

(2014) B. Bielsa et al.   SCIENTIA HORTICULTURAE

Transcriptional dynamics of the developing sweet cherry (Prunus avium L.) fruit: sequencing, annotation and expression profiling of exocarp-associated genes

(2014) Merianne Alkio et al.   Horticulture Research

Genome-wide DNA polymorphisms in two cultivars of mei (Prunus mume sieb. et zucc.)

(2013) Lidan Sun et al.   BMC GENETICS

Self-(in)compatibility genotypes of Moroccan apricots indicate differences and similarities in the crop history of European and North African apricot germplasm

(2013) Ossama Kodad et al.   BMC PLANT BIOLOGY

Fine mapping and identification of a candidate gene for a major locus controlling maturity date in peach

(2013) Raul Pirona et al.   BMC PLANT BIOLOGY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution

(2013) Ignazio Verde et al.   NATURE GENETICS

Genome-wide expression profiles of seasonal bud dormancy at four critical stages in Japanese apricot

(2013) Wenjun Zhong et al.   PLANT MOLECULAR BIOLOGY

Deep RNA-Seq uncovers the peach transcriptome landscape

(2013) Lu Wang et al.   PLANT MOLECULAR BIOLOGY

Identifying a Carotenoid Cleavage Dioxygenase (ccd4) Gene Controlling Yellow/White Fruit Flesh Color of Peach

(2013) Marco Adami et al.   PLANT MOLECULAR BIOLOGY REPORTER

Quantitative Trait Loci (QTL) and Mendelian Trait Loci (MTL) Analysis in Prunus: a Breeding Perspective and Beyond

(2013) Juan Alfonso Salazar et al.   PLANT MOLECULAR BIOLOGY REPORTER

Construction and Comparative Analyses of Highly Dense Linkage Maps of Two Sweet Cherry Intra-Specific Progenies of Commercial Cultivars

(2013) Carolina Klagges et al.   PLoS One

Application of Genomic and Quantitative Genetic Tools to Identify Candidate Resistance Genes for Brown Rot Resistance in Peach

(2013) Pedro J. Martínez-García et al.   PLoS One

Rapid gene-based SNP and haplotype marker development in non-model eukaryotes using 3'UTR sequencing

(2012) Tyson Koepke et al.   BMC GENOMICS

Loss of genetic diversity as a signature of apricot domestication and diffusion into the Mediterranean Basin

(2012) Hedia Bourguiba et al.   BMC PLANT BIOLOGY

Two combinatorial optimization problems for SNP discovery using base-specific cleavage and mass spectrometry

(2012) Xin Chen et al.   BMC Systems Biology

Using Tablet for visual exploration of second-generation sequencing data

(2012) I. Milne et al.   BRIEFINGS IN BIOINFORMATICS

Clarifying Omics Concepts, Challenges, and Opportunities for Prunus Breeding in the Postgenomic Era

(2012) Pedro Martínez-Gómez et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Effect prediction of identified SNPs linked to fruit quality and chilling injury in peach [Prunus persica (L.) Batsch]

(2012) Pedro J. Martínez-García et al.   PLANT MOLECULAR BIOLOGY

Development and Evaluation of a 9K SNP Array for Peach by Internationally Coordinated SNP Detection and Validation in Breeding Germplasm

(2012) Ignazio Verde et al.   PLoS One

A Comprehensive Evaluation of Alignment Algorithms in the Context of RNA-Seq

(2012) Robert Lindner et al.   PLoS One

Development and Evaluation of a Genome-Wide 6K SNP Array for Diploid Sweet Cherry and Tetraploid Sour Cherry

(2012) Cameron Peace et al.   PLoS One

A first insight into peach [Prunus persica (L.) Batsch] SNP variability

(2012) María José Aranzana et al.   Tree Genetics & Genomes

High density SNP mapping and QTL analysis for fruit quality characteristics in peach (Prunus persica L.)

(2012) Pedro J. Martínez-García et al.   Tree Genetics & Genomes

Genetic dissection of aroma volatile compounds from the essential oil of peach fruit: QTL analysis and identification of candidate genes using dense SNP maps

(2012) Iban Eduardo et al.   Tree Genetics & Genomes

Whole genome sequencing of peach (Prunus persica L.) for SNP identification and selection

(2011) Riaz Ahmad et al.   BMC GENOMICS

New approaches to Prunus transcriptome analysis

(2011) Pedro Martínez-Gómez et al.   GENETICA

Genetic variation, population structure and linkage disequilibrium in peach commercial varieties

(2010) Maria Aranzana et al.   BMC GENETICS

Construction of an almond linkage map in an Australian population Nonpareil × Lauranne

(2010) Iraj Tavassolian et al.   BMC GENOMICS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Synteny of Prunus and other model plant species

(2009) Sook Jung et al.   BMC GENOMICS

Discrimination of SNP genotypes associated with complex haplotypes by high resolution melting analysis in almond: implications for improved marker efficiencies

(2009) Shu-Biao Wu et al.   MOLECULAR BREEDING

Mapping SNP-anchored genes using high-resolution melting analysis in almond

(2009) Shu-Biao Wu et al.   MOLECULAR GENETICS AND GENOMICS