General overview on structure prediction of twilight-zone proteins

Knowledge Discovery and interactive Data Mining in Bioinformatics - State-of-the-Art, future challenges and research directions

(2014) Andreas Holzinger et al.   BMC BIOINFORMATICS

The Structure and Dynamics of BmR1 Protein from Brugia malayi: In Silico Approaches

(2014) Bee Khor et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

SSThread: Template-free protein structure prediction by threading pairs of contacting secondary structures followed by assembly of overlapping pairs

(2014) Kevin J. Maurice   JOURNAL OF COMPUTATIONAL CHEMISTRY

In silico and in vivo studies of molecular structures and mechanisms of AtPCS1 protein involved in binding arsenite and/or cadmium in plant cells

(2014) Noor Nahar et al.   JOURNAL OF MOLECULAR MODELING

Segment assembly, structure alignment and iterative simulation in protein structure prediction

(2013) Yang Zhang et al.   BMC BIOLOGY

A homology/ab initiohybrid algorithm for sampling near-native protein conformations

(2013) Priyanka Dhingra et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Efficient Sampling in Fragment-Based Protein Structure Prediction Using an Estimation of Distribution Algorithm

(2013) David Simoncini et al.   PLoS One

Toward optimal fragment generations forab initioprotein structure assembly

(2013) Dong Xu et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Interplay of I-TASSER and QUARK for template-based and ab initio protein structure prediction in CASP10

(2013) Yang Zhang   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Modeling of the major gas vesicle protein, GvpA: From protein sequence to vesicle wall structure

(2012) Hussein M. Ezzeldin et al.   JOURNAL OF STRUCTURAL BIOLOGY

Template-based protein structure modeling using the RaptorX web server

(2012) Morten Källberg et al.   Nature Protocols

De novo structure prediction and experimental characterization of folded peptoid oligomers

(2012) G. L. Butterfoss et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Basic protein structure prediction for the biologist: A review

(2011) M. Mihăşan   Archives of Biological Sciences

Ab Initio Structural Modeling of and Experimental Validation for Chlamydia trachomatis Protein CT296 Reveal Structural Similarity to Fe(II) 2-Oxoglutarate-Dependent Enzymes

(2011) K. E. Kemege et al.   JOURNAL OF BACTERIOLOGY

Structural model of the gas vesicle protein GvpA and analysis of GvpA mutants in vivo

(2011) Timo Strunk et al.   MOLECULAR MICROBIOLOGY

Critical assessment of methods of protein structure prediction (CASP)-round IX

(2011) John Moult et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

CASP9 assessment of free modeling target predictions

(2011) Lisa Kinch et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Practically Useful: What the RosettaProtein Modeling Suite Can Do for You

(2010) Kristian W. Kaufmann et al.   BIOCHEMISTRY

Solid-State NMR Characterization of Gas Vesicle Structure

(2010) Astrid C. Sivertsen et al.   BIOPHYSICAL JOURNAL

I-TASSER: a unified platform for automated protein structure and function prediction

(2010) Ambrish Roy et al.   Nature Protocols

Modular prediction of protein structural classes from sequences of twilight-zone identity with predicting sequences

(2009) Marcin J Mizianty et al.   BMC BIOINFORMATICS

REMO: A new protocol to refine full atomic protein models from C-alpha traces by optimizing hydrogen-bonding networks

(2009) Yunqi Li et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

I-TASSER: Fully automated protein structure prediction in CASP8

(2009) Yang Zhang   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Assessment of CASP8 structure predictions for template free targets

(2009) Moshe Ben-David et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

The Twilight Zone between Protein Order and Disorder

(2008) A. Szilágyi et al.   BIOPHYSICAL JOURNAL

I-TASSER server for protein 3D structure prediction

(2008) Yang Zhang   BMC BIOINFORMATICS

Progress and challenges in protein structure prediction

(2008) Yang Zhang   CURRENT OPINION IN STRUCTURAL BIOLOGY

Combination of Several Bioinformatics Approaches for the Identification of New Putative Glycosyltransferases inArabidopsis

(2008) Sara Fasmer Hansen et al.   JOURNAL OF PROTEOME RESEARCH

MUSTER: Improving protein sequence profile-profile alignments by using multiple sources of structure information

(2008) Sitao Wu et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS