Toward optimal fragment generations forab initioprotein structure assembly

HHfrag: HMM-based fragment detection using HHpred

(2011) Ivan Kalev et al.   BIOINFORMATICS

Protein 3D Structure Computed from Evolutionary Sequence Variation

(2011) Debora S. Marks et al.   PLoS One

Automated protein structure modeling in CASP9 by I-TASSER pipeline combined with QUARK-based ab initio folding and FG-MD-based structure refinement

(2011) Dong Xu et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

The dual role of fragments in fragment-assembly methods for de novo protein structure prediction

(2011) Julia Handl et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Evaluation of residue-residue contact predictions in CASP9

(2011) Bohdan Monastyrskyy et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Improving Protein Structure Prediction Using Multiple Sequence-Based Contact Predictions

(2011) Sitao Wu et al.   STRUCTURE

Recognizing Protein Substructure Similarity Using Segmental Threading

(2010) Sitao Wu et al.   STRUCTURE

Generating Triangulated Macromolecular Surfaces by Euclidean Distance Transform

(2009) Dong Xu et al.   PLoS One

Assessment of domain boundary predictions and the prediction of intramolecular contacts in CASP8

(2009) Iakes Ezkurdia et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

A comprehensive assessment of sequence-based and template-based methods for protein contact prediction

(2008) Sitao Wu et al.   BIOINFORMATICS

ANGLOR: A Composite Machine-Learning Algorithm for Protein Backbone Torsion Angle Prediction

(2008) Sitao Wu et al.   PLoS One

Prediction of protein structure from ideal forms

(2008) William R. Taylor et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

MUSTER: Improving protein sequence profile-profile alignments by using multiple sources of structure information

(2008) Sitao Wu et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Reconstruction of Protein Backbones from the BriX Collection of Canonical Protein Fragments

(2008) Lies Baeten et al.   PLoS Computational Biology