pocketZebra: a web-server for automated selection and classification of subfamily-specific binding sites by bioinformatic analysis of diverse protein families

Bioinformatic analysis of protein families for identification of variable amino acid residues responsible for functional diversity

(2013) Dmitry Suplatov et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

LISE: a server using ligand-interacting and site-enriched protein triangles for prediction of ligand-binding sites

(2013) Zhong-Ru Xie et al.   NUCLEIC ACIDS RESEARCH

Bioinformatic analysis of alpha/beta-hydrolase fold enzymes reveals subfamily-specific positions responsible for discrimination of amidase and lipase activities

(2012) D. A. Suplatov et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Rational Engineering of Enzyme Allosteric Regulation through Sequence Evolution Analysis

(2012) Jae-Seong Yang et al.   PLoS Computational Biology

Combining Global and Local Measures for Structure-Based Druggability Predictions

(2011) Andrea Volkamer et al.   Journal of Chemical Information and Modeling

The α/β-Hydrolase Fold 3DM Database (ABHDB) as a Tool for Protein Engineering

(2010) Robert Kourist et al.   CHEMBIOCHEM

Prediction of Active Site Cleft Using Support Vector Machines

(2010) Shrihari Sonavane et al.   Journal of Chemical Information and Modeling

fpocket: online tools for protein ensemble pocket detection and tracking

(2010) P. Schmidtke et al.   NUCLEIC ACIDS RESEARCH

ASD: a comprehensive database of allosteric proteins and modulators

(2010) Z. Huang et al.   NUCLEIC ACIDS RESEARCH

Roll: a new algorithm for the detection of protein pockets and cavities with a rolling probe sphere

(2009) Jian Yu et al.   BIOINFORMATICS

Combining specificity determining and conserved residues improves functional site prediction

(2009) Olga V Kalinina et al.   BMC BIOINFORMATICS

Fpocket: An open source platform for ligand pocket detection

(2009) Vincent Le Guilloux et al.   BMC BIOINFORMATICS

SITEHOUND-web: a server for ligand binding site identification in protein structures

(2009) M. Hernandez et al.   NUCLEIC ACIDS RESEARCH

Detection of multiscale pockets on protein surfaces using mathematical morphology

(2009) Takeshi Kawabata   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Characterization and prediction of residues determining protein functional specificity

(2008) John A. Capra et al.   BIOINFORMATICS

Allosteric modulators of GPCRs: a novel approach for the treatment of CNS disorders

(2008) P. Jeffrey Conn et al.   NATURE REVIEWS DRUG DISCOVERY

MolAxis: a server for identification of channels in macromolecules

(2008) Eitan Yaffe et al.   NUCLEIC ACIDS RESEARCH