Bioinformatic analysis of protein families for identification of variable amino acid residues responsible for functional diversity

Accurate prediction of protein structural classes using functional domains and predicted secondary structure sequences

(2012) Amin Ahmadi Adl et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

An automated stochastic approach to the identification of the protein specificity determinants and functional subfamilies

(2010) Pavel V Mazin et al.   Algorithms for Molecular Biology

Promoting a structural view of biology for varied audiences: an overview of RCSB PDB resources and experiences

(2010) Shuchismita Dutta et al.   JOURNAL OF APPLIED CRYSTALLOGRAPHY

Evolution of Substrate Specificity within a Diverse Family of β/α-Barrel-fold Basic Amino Acid Decarboxylases

(2010) Xiaoyi Deng et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Computational tools for designing and engineering biocatalysts

(2009) Jiri Damborsky et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Simple is beautiful: a straightforward approach to improve the delineation of true and false positives in PSI-BLAST searches

(2008) M. M. Lee et al.   BIOINFORMATICS

Characterization and prediction of residues determining protein functional specificity

(2008) John A. Capra et al.   BIOINFORMATICS

Prediction of protein functional residues from sequence by probability density estimation

(2008) J. D. Fischer et al.   BIOINFORMATICS

Matt: Local Flexibility Aids Protein Multiple Structure Alignment

(2008) Matthew Menke et al.   PLoS Computational Biology