ModBase, a database of annotated comparative protein structure models and associated resources

Accurate SAXS Profile Computation and its Assessment by Contrast Variation Experiments

(2013) Dina Schneidman-Duhovny et al.   BIOPHYSICAL JOURNAL

Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology

(2013) Catharina Steentoft et al.   EMBO JOURNAL

Fast-SAXS-pro: A unified approach to computing SAXS profiles of DNA, RNA, protein, and their complexes

(2013) Krishnakumar M. Ravikumar et al.   JOURNAL OF CHEMICAL PHYSICS

Coordinating the impact of structural genomics on the human α-helical transmembrane proteome

(2013) Ursula Pieper et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The Protein Model Portal—a comprehensive resource for protein structure and model information

(2013) Juergen Haas et al.   Database-The Journal of Biological Databases and Curation

Target Prediction for an Open Access Set of Compounds Active against Mycobacterium tuberculosis

(2013) Francisco Martínez-Jiménez et al.   PLoS Computational Biology

Computation of small-angle scattering profiles with three-dimensional Zernike polynomials

(2012) Haiguang Liu et al.   ACTA CRYSTALLOGRAPHICA SECTION A

A method for integrative structure determination of protein-protein complexes

(2012) Dina Schneidman-Duhovny et al.   BIOINFORMATICS

SALIGN: a web server for alignment of multiple protein sequences and structures

(2012) H. Braberg et al.   BIOINFORMATICS

A catalogue of putative HIV-1 protease host cell substrates

(2012) Francis Impens et al.   BIOLOGICAL CHEMISTRY

Impact of Mutations on the Allosteric Conformational Equilibrium

(2012) Patrick Weinkam et al.   JOURNAL OF MOLECULAR BIOLOGY

The RCSB Protein Data Bank: new resources for research and education

(2012) Peter W. Rose et al.   NUCLEIC ACIDS RESEARCH

Structure-based model of allostery predicts coupling between distant sites

(2012) P. Weinkam et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Small angle X-ray scattering as a complementary tool for high-throughput structural studies

(2011) Thomas D. Grant et al.   BIOPOLYMERS

Comparative Modeling: The State of the Art and Protein Drug Target Structure Prediction

(2011) Tianyun Liu et al.   COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING

XRCC4 Protein Interactions with XRCC4-like Factor (XLF) Create an Extended Grooved Scaffold for DNA Ligation and Double Strand Break Repair

(2011) Michal Hammel et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Statistical Potential for Modeling and Ranking of Protein–Ligand Interactions

(2011) Hao Fan et al.   Journal of Chemical Information and Modeling

HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment

(2011) Michael Remmert et al.   NATURE METHODS

AquaSAXS: a web server for computation and fitting of SAXS profiles with non-uniformally hydrated atomic models

(2011) Frédéric Poitevin et al.   NUCLEIC ACIDS RESEARCH

GenBank

(2011) D. A. Benson et al.   NUCLEIC ACIDS RESEARCH

Generalized Fragment Picking in Rosetta: Design, Protocols and Applications

(2011) Dominik Gront et al.   PLoS One

Template-Based Protein Modeling: Recent Methodological Advances

(2010) Pankaj Daga et al.   CURRENT TOPICS IN MEDICINAL CHEMISTRY

Macromolecular docking restrained by a small angle X-ray scattering profile

(2010) Dina Schneidman-Duhovny et al.   JOURNAL OF STRUCTURAL BIOLOGY

Emerging principles in protease-based drug discovery

(2010) Marcin Drag et al.   NATURE REVIEWS DRUG DISCOVERY

ModBase, a database of annotated comparative protein structure models, and associated resources

(2010) U. Pieper et al.   NUCLEIC ACIDS RESEARCH

genenames.org: the HGNC resources in 2011

(2010) R. L. Seal et al.   NUCLEIC ACIDS RESEARCH

FoXS: a web server for rapid computation and fitting of SAXS profiles

(2010) D. Schneidman-Duhovny et al.   NUCLEIC ACIDS RESEARCH

Ongoing and future developments at the Universal Protein Resource

(2010)   NUCLEIC ACIDS RESEARCH

Structure of a putative BenF-like porin from Pseudomonas fluorescens Pf-5 at 2.6 Å resolution

(2010) Parthasarathy Sampathkumar et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Structure and flexibility within proteins as identified through small angle X-ray scattering

(2009) M. Pelikan et al.   GENERAL PHYSIOLOGY AND BIOPHYSICS

The completion of the Mammalian Gene Collection (MGC)

(2009) et al.   GENOME RESEARCH

Robust, high-throughput solution structural analyses by small angle X-ray scattering (SAXS)

(2009) Greg L Hura et al.   NATURE METHODS

The UCSC Genome Browser database: update 2010

(2009) B. Rhead et al.   NUCLEIC ACIDS RESEARCH

GenBank

(2009) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH

HIV- 1 Protease Inhibits Cap- and Poly(A)-Dependent Translation upon eIF4GI and PABP Cleavage

(2009) Alfredo Castelló et al.   PLoS One

Outcome of a Workshop on Applications of Protein Models in Biomedical Research

(2009) Torsten Schwede et al.   STRUCTURE

Predicting Protein Ligand Binding Sites by Combining Evolutionary Sequence Conservation and 3D Structure

(2009) John A. Capra et al.   PLoS Computational Biology

A Kernel for Open Source Drug Discovery in Tropical Diseases

(2009) Leticia Ortí et al.   PLoS Neglected Tropical Diseases

Genomic-scale prioritization of drug targets: the TDR Targets database

(2008) Fernán Agüero et al.   NATURE REVIEWS DRUG DISCOVERY

NCBI BLAST: a better web interface

(2008) M. Johnson et al.   NUCLEIC ACIDS RESEARCH

MODBASE, a database of annotated comparative protein structure models and associated resources

(2008) U. Pieper et al.   NUCLEIC ACIDS RESEARCH

InterPro: the integrative protein signature database

(2008) S. Hunter et al.   NUCLEIC ACIDS RESEARCH

How well can the accuracy of comparative protein structure models be predicted?

(2008) David Eramian et al.   PROTEIN SCIENCE

An all-atom structure-based potential for proteins: Bridging minimal models with all-atom empirical forcefields

(2008) Paul C. Whitford et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Structural Analysis Reveals Conformational Plasticity in the Recognition of RNA 3′ Ends by the Human La Protein

(2008) Olga Kotik-Kogan et al.   STRUCTURE