Conformations of p53 response elements in solution deduced using site-directed spin labeling and Monte Carlo sampling

Covariation between homeodomain transcription factors and the shape of their DNA binding sites

(2013) Iris Dror et al.   NUCLEIC ACIDS RESEARCH

Structure of p53 binding to the BAX response element reveals DNA unwinding and compression to accommodate base-pair insertion

(2013) Yongheng Chen et al.   NUCLEIC ACIDS RESEARCH

Structural studies of p53 inactivation by DNA-contact mutations and its rescue by suppressor mutations via alternative protein-DNA interactions

(2013) A. Eldar et al.   NUCLEIC ACIDS RESEARCH

DNAshape: a method for the high-throughput prediction of DNA structural features on a genomic scale

(2013) Tianyin Zhou et al.   NUCLEIC ACIDS RESEARCH

TFBSshape: a motif database for DNA shape features of transcription factor binding sites

(2013) Lin Yang et al.   NUCLEIC ACIDS RESEARCH

Genomic Regions Flanking E-Box Binding Sites Influence DNA Binding Specificity of bHLH Transcription Factors through DNA Shape

(2013) Raluca Gordân et al.   Cell Reports

Site-Directed Spin Labeling of DNA Reveals Mismatch-Induced Nanometer Distance Changes between Flanking Nucleotides

(2012) Dorith Wunnicke et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Global Structure of a Three-Way Junction in a Phi29 Packaging RNA Dimer Determined Using Site-Directed Spin Labeling

(2012) Xiaojun Zhang et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Protein-induced changes in DNA structure and dynamics observed with noncovalent site-directed spin labeling and PELDOR

(2012) Gunnar W. Reginsson et al.   NUCLEIC ACIDS RESEARCH

A Map of Minor Groove Shape and Electrostatic Potential from Hydroxyl Radical Cleavage Patterns of DNA

(2011) Eric P. Bishop et al.   ACS Chemical Biology

Analysis of Conformational Changes in the DNA Junction-Resolving Enzyme T7 Endonuclease I on Binding a Four-Way Junction Using EPR

(2011) Alasdair D. J. Freeman et al.   BIOCHEMISTRY

An induced fit mechanism regulates p53 DNA binding kinetics to confer sequence specificity

(2011) Tom J Petty et al.   EMBO JOURNAL

Crystal Structure of a Multidomain Human p53 Tetramer Bound to the Natural CDKN1A (p21) p53-Response Element

(2011) S. Emamzadah et al.   MOLECULAR CANCER RESEARCH

Flipping Watson and Crick

(2011) Barry Honig et al.   NATURE

The many twists and turns of DNA: template, telomere, tool, and target

(2010) Martin Egli et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Diversity in DNA recognition by p53 revealed by crystal structures with Hoogsteen base pairs

(2010) Malka Kitayner et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Sequence-dependent cooperative binding of p53 to DNA targets and its relationship to the structural properties of the DNA targets

(2010) Itai Beno et al.   NUCLEIC ACIDS RESEARCH

Crystal Structure of the p53 Core Domain Bound to a Full Consensus Site as a Self-Assembled Tetramer

(2010) Yongheng Chen et al.   STRUCTURE

The Tumor Suppressor p53: From Structures to Drug Discovery

(2010) A. C. Joerger et al.   Cold Spring Harbor Perspectives in Biology

Human Telomeric Quadruplex Conformations Studied by Pulsed EPR

(2009) Vijay Singh et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Relative Orientation of Rigid Nitroxides by PELDOR: Beyond Distance Measurements in Nucleic Acids

(2009) Olav Schiemann et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Site-Specific DNA Structural and Dynamic Features Revealed by Nucleotide-Independent Nitroxide Probes

(2009) Anna M. Popova et al.   BIOCHEMISTRY

The role of DNA shape in protein–DNA recognition

(2009) Remo Rohs et al.   NATURE

Lesion-induced DNA weak structural changes detected by pulsed EPR spectroscopy combined with site-directed spin labelling

(2009) Giuseppe Sicoli et al.   NUCLEIC ACIDS RESEARCH

The most frequent short sequences in non-coding DNA

(2009) Juan A. Subirana et al.   NUCLEIC ACIDS RESEARCH

p53-Induced DNA Bending: The Interplay between p53−DNA and p53−p53 Interactions

(2008) Yongping Pan et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Transcriptional control of human p53-regulated genes

(2008) Todd Riley et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY