A transcriptomics-based kinetic model for ethylene biosynthesis in tomato (Solanum lycopersicum) fruit: development, validation and exploration of novel regulatory mechanisms

Correction: Dynamic Analysis of Integrated Signaling, Metabolic, and Regulatory Networks

(2014) Jong Min Lee et al.   PLoS Computational Biology

Kinetic modelling of plant metabolic pathways

(2012) Johann M. Rohwer   JOURNAL OF EXPERIMENTAL BOTANY

Computational models of plant development and form

(2012) Przemyslaw Prusinkiewicz et al.   NEW PHYTOLOGIST

Ethylene in vegetative development: a tale with a riddle

(2012) Filip Vandenbussche et al.   NEW PHYTOLOGIST

S-adenosyl-l-methionine usage during climacteric ripening of tomato in relation to ethylene and polyamine biosynthesis and transmethylation capacity

(2012) Bram Van de Poel et al.   PHYSIOLOGIA PLANTARUM

Targeted Systems Biology Profiling of Tomato Fruit Reveals Coordination of the Yang Cycle and a Distinct Regulation of Ethylene Biosynthesis during Postclimacteric Ripening

(2012) B. Van de Poel et al.   PLANT PHYSIOLOGY

Recycling of Methylthioadenosine Is Essential for Normal Vascular Development and Reproduction in Arabidopsis

(2012) I. Waduwara-Jayabahu et al.   PLANT PHYSIOLOGY

Cold-induced changes in ACC metabolism determine softening recovery in 1-MCP treated ‘conference’ pears

(2012) Maria-Angeles Chiriboga et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

Model-based classification of tomato fruit development and ripening related to physiological maturity

(2012) B. Van de Poel et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

Influence of harvest time and 1-MCP application on postharvest ripening and ethylene biosynthesis of ‘Jonagold’ apple

(2012) I. Bulens et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

Mathematical modeling elucidates the role of transcriptional feedback in gibberellin signaling

(2012) A. M. Middleton et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of potential target genes for the tomato fruit-ripening regulator RIN by chromatin immunoprecipitation

(2011) Masaki Fujisawa et al.   BMC PLANT BIOLOGY

Multi-dimensional regulation of metabolic networks shaping plant development and performance

(2011) R. Kooke et al.   JOURNAL OF EXPERIMENTAL BOTANY

Root aeration via aerenchymatous phellem: three-dimensional micro-imaging and radial O2 profiles in Melilotus siculus

(2011) Pieter Verboven et al.   NEW PHYTOLOGIST

Transcriptome and Metabolite Profiling Show That APETALA2a Is a Major Regulator of Tomato Fruit Ripening

(2011) R. Karlova et al.   PLANT CELL

Tissue- and Cell-Type Specific Transcriptome Profiling of Expanding Tomato Fruit Provides Insights into Metabolic and Regulatory Specialization and Cuticle Formation

(2011) Antonio J. Matas et al.   PLANT CELL

Plant systems biology: network matters

(2011) MIKAËL LUCAS et al.   PLANT CELL AND ENVIRONMENT

Protocol: An updated integrated methodology for analysis of metabolites and enzyme activities of ethylene biosynthesis

(2011) Inge Bulens et al.   Plant Methods

The Tomato MADS-Box Transcription Factor RIPENING INHIBITOR Interacts with Promoters Involved in Numerous Ripening Processes in a COLORLESS NONRIPENING-Dependent Manner

(2011) C. Martel et al.   PLANT PHYSIOLOGY

Where systems biology meets postharvest

(2011) Maarten L.A.T.M. Hertog et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

Redefining plant systems biology: from cell to ecosystem

(2011) Joost J.B. Keurentjes et al.   TRENDS IN PLANT SCIENCE

Protein Phosphatase 2A Controls Ethylene Biosynthesis by Differentially Regulating the Turnover of ACC Synthase Isoforms

(2011) Kyle R. Skottke et al.   PLoS Genetics

A tomato (Solanum lycopersicum) APETALA2/ERF gene, SlAP2a, is a negative regulator of fruit ripening

(2010) Mi-Young Chung et al.   PLANT JOURNAL

Plant structure visualization by high-resolution X-ray computed tomography

(2010) Stijn Dhondt et al.   TRENDS IN PLANT SCIENCE

Polyamines and cellular metabolism in plants: transgenic approaches reveal different responses to diamine putrescine versus higher polyamines spermidine and spermine

(2009) Autar K. Mattoo et al.   AMINO ACIDS

Biology and genetic engineering of fruit maturation for enhanced quality and shelf-life

(2009) Antonio J Matas et al.   CURRENT OPINION IN BIOTECHNOLOGY

Recent advances in ethylene research

(2009) Z. Lin et al.   JOURNAL OF EXPERIMENTAL BOTANY

Functions of the ERF transcription factor family in plants

(2008) Zhao-Shi Xu et al.   Botany

Three-Dimensional Gas Exchange Pathways in Pome Fruit Characterized by Synchrotron X-Ray Computed Tomography

(2008) P. Verboven et al.   PLANT PHYSIOLOGY

Physiological response of ‘Larry Ann’ plums to cold storage and 1-MCP treatment

(2008) Christian Larrigaudière et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

A Continuum Model for Metabolic Gas Exchange in Pear Fruit

(2008) Q. Tri Ho et al.   PLoS Computational Biology