- Home
- Publications
- Publication Search
- Publication Details
Title
Plant systems biology: network matters
Authors
Keywords
-
Journal
PLANT CELL AND ENVIRONMENT
Volume 34, Issue 4, Pages 535-553
Publisher
Wiley
Online
2011-02-18
DOI
10.1111/j.1365-3040.2010.02273.x
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Biologie systémique
- (2011) Anne-Ruxandra Carvunis et al. M S-MEDECINE SCIENCES
- Computational Morphodynamics: A Modeling Framework to Understand Plant Growth
- (2010) Vijay Chickarmane et al. Annual Review of Plant Biology
- Logic-Based Models for the Analysis of Cell Signaling Networks
- (2010) Melody K. Morris et al. BIOCHEMISTRY
- Computer simulation: The imaginary friend of auxin transport biology
- (2010) Philip Garnett et al. BIOESSAYS
- So what do we really mean when we say that systems biology is holistic?
- (2010) Derek Gatherer BMC Systems Biology
- A plausible mechanism for auxin patterning along the developing root
- (2010) Victoria V Mironova et al. BMC Systems Biology
- Stochastic and deterministic multiscale models for systems biology: an auxin-transport case study
- (2010) Jamie Twycross et al. BMC Systems Biology
- Mathematical Modelling of the Aux/IAA Negative Feedback Loop
- (2010) A. M. Middleton et al. BULLETIN OF MATHEMATICAL BIOLOGY
- Systems Biology: An Approach
- (2010) P Kohl et al. CLINICAL PHARMACOLOGY & THERAPEUTICS
- A design principle underlying the synchronization of oscillations in cellular systems
- (2010) J.-R. Kim et al. JOURNAL OF CELL SCIENCE
- Why work and discuss the basic principles of plant modelling 50 years after the first plant models?
- (2010) F. Tardieu JOURNAL OF EXPERIMENTAL BOTANY
- Improving the use of modelling for projections of climate change impacts on crops and pastures
- (2010) J. F. Soussana et al. JOURNAL OF EXPERIMENTAL BOTANY
- Model-assisted integration of physiological and environmental constraints affecting the dynamic and spatial patterns of root water uptake from soils
- (2010) Xavier Draye et al. JOURNAL OF EXPERIMENTAL BOTANY
- Simulation of wheat growth and development based on organ-level photosynthesis and assimilate allocation
- (2010) J. B. Evers et al. JOURNAL OF EXPERIMENTAL BOTANY
- Development and verification of a water and sugar transport model using measured stem diameter variations
- (2010) Veerle De Schepper et al. JOURNAL OF EXPERIMENTAL BOTANY
- Modelling the crop: from system dynamics to systems biology
- (2010) Xinyou Yin et al. JOURNAL OF EXPERIMENTAL BOTANY
- A method to construct dose–response curves for a wide range of environmental factors and plant traits by means of a meta-analysis of phenotypic data
- (2010) Hendrik Poorter et al. JOURNAL OF EXPERIMENTAL BOTANY
- Modelling temperature-compensated physiological rates, based on the co-ordination of responses to temperature of developmental processes
- (2010) B. Parent et al. JOURNAL OF EXPERIMENTAL BOTANY
- A model for gas transport in pear fruit at multiple scales
- (2010) Q. Tri Ho et al. JOURNAL OF EXPERIMENTAL BOTANY
- Link communities reveal multiscale complexity in networks
- (2010) Yong-Yeol Ahn et al. NATURE
- Imaging plant growth in 4D: robust tissue reconstruction and lineaging at cell resolution
- (2010) Romain Fernandez et al. NATURE METHODS
- VisuaLRTC: A New View on Lateral Root Initiation by Combining Specific Transcriptome Data Sets
- (2010) B. Parizot et al. PLANT PHYSIOLOGY
- Auxin Carriers Localization Drives Auxin Accumulation in Plant Cells Infected by Frankia in Casuarina glauca Actinorhizal Nodules
- (2010) F. Perrine-Walker et al. PLANT PHYSIOLOGY
- The tensor-based model for growth and cell divisions of the root apex. II. Lateral root formation
- (2010) Joanna Szymanowska-Pułka et al. PLANTA
- Coordination of plant cell division and expansion in a simple morphogenetic system
- (2010) L. Dupuy et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Revealing strengths and weaknesses of methods for gene network inference
- (2010) D. Marbach et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Modeling Auxin-regulated Development
- (2010) P. Krupinski et al. Cold Spring Harbor Perspectives in Biology
- Advances in analysis of transcriptional regulatory networks
- (2010) Tae-Min Kim et al. Wiley Interdisciplinary Reviews-Systems Biology and Medicine
- A dynamic model of plant growth with interactions between development and functional mechanisms to study plant structural plasticity related to trophic competition
- (2009) A. Mathieu et al. ANNALS OF BOTANY
- Lessons from the DREAM2 Challenges
- (2009) Gustavo Stolovitzky et al. Annals of the New York Academy of Sciences
- FORG3D: Force-directed 3D graph editor for visualization of integrated genome scale data
- (2009) Jussi Paananen et al. BMC Systems Biology
- SNAVI: Desktop application for analysis and visualization of large-scale signaling networks
- (2009) Avi Ma'ayan et al. BMC Systems Biology
- The virtual cell--a candidate co-ordinator for 'middle-out' modelling of biological systems
- (2009) D. C. Walker et al. BRIEFINGS IN BIOINFORMATICS
- Integrated omics approaches in plant systems biology
- (2009) Atsushi Fukushima et al. CURRENT OPINION IN CHEMICAL BIOLOGY
- Back to the future: evolution of computational models in plant morphogenesis
- (2009) Verônica A Grieneisen et al. CURRENT OPINION IN PLANT BIOLOGY
- One, two, three…models for trichome patterning in Arabidopsis?
- (2009) Marina Pesch et al. CURRENT OPINION IN PLANT BIOLOGY
- Integrating physical stress, growth, and development
- (2009) Magalie Uyttewaal et al. CURRENT OPINION IN PLANT BIOLOGY
- Systems Biology
- (2009) Måns Ehrenberg FEBS LETTERS
- A unifying view of 21st century systems biology
- (2009) Marc Vidal FEBS LETTERS
- Systems Biology: The elements and principles of Life
- (2009) Hans V. Westerhoff et al. FEBS LETTERS
- Integration of transport-based models for phyllotaxis and midvein formation
- (2009) E. M. Bayer et al. GENES & DEVELOPMENT
- Functional–structural plant modelling: a new versatile tool in crop science
- (2009) J. Vos et al. JOURNAL OF EXPERIMENTAL BOTANY
- The mechanics behind plant development
- (2009) Olivier Hamant et al. NEW PHYTOLOGIST
- VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology
- (2009) Zhenjun Hu et al. NUCLEIC ACIDS RESEARCH
- The dynamics of root meristem distribution in the soil
- (2009) L. DUPUY et al. PLANT CELL AND ENVIRONMENT
- Systems Biology Update: Cell Type-Specific Transcriptional Regulatory Networks
- (2009) L. Pu et al. PLANT PHYSIOLOGY
- Plant MetGenMAP: An Integrative Analysis System for Plant Systems Biology
- (2009) J.-G. Joung et al. PLANT PHYSIOLOGY
- Impact of clock-associated Arabidopsis pseudo-response regulators in metabolic coordination
- (2009) A. Fukushima et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Control of bud activation by an auxin transport switch
- (2009) P. Prusinkiewicz et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Building biological memory by linking positive feedback loops
- (2009) D.-E. Chang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Turning a plant tissue into a living cell froth through isotropic growth
- (2009) F. Corson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Arabidopsis thaliana as a model organism in systems biology
- (2009) Jaimie M. Van Norman et al. Wiley Interdisciplinary Reviews-Systems Biology and Medicine
- A Systems Approach Uncovers Restrictions for Signal Interactions Regulating Genome-wide Responses to Nutritional Cues in Arabidopsis
- (2009) Gabriel Krouk et al. PLoS Computational Biology
- Reverse-engineering the Arabidopsis thaliana transcriptional network under changing environmental conditions
- (2009) Javier Carrera et al. GENOME BIOLOGY
- INFERENCE OF GENE REGULATORY NETWORKS USING BOOLEAN-NETWORK INFERENCE METHODS
- (2009) GRAHAM J. HICKMAN et al. Journal of Bioinformatics and Computational Biology
- Gene regulatory network inference: Data integration in dynamic models—A review
- (2008) Michael Hecker et al. BIOSYSTEMS
- GraphCrunch: A tool for large network analyses
- (2008) Tijana Milenković et al. BMC BIOINFORMATICS
- A systems view of nitrogen nutrient and metabolite responses in Arabidopsis
- (2008) Elena A Vidal et al. CURRENT OPINION IN PLANT BIOLOGY
- Regulative feedback in pattern formation: towards a general relativistic theory of positional information
- (2008) J. Jaeger et al. DEVELOPMENT
- OpenAlea: a visual programming and component-based software platform for plant modelling
- (2008) Christophe Pradal et al. FUNCTIONAL PLANT BIOLOGY
- The flowering of systems approaches in plant and crop biology
- (2008) Malcolm Bennett et al. NEW PHYTOLOGIST
- The tensor-based model for growth and cell divisions of the root apex. I. The significance of principal directions
- (2008) Jerzy Nakielski PLANTA
- Boolean Network Model Predicts Cell Cycle Sequence of Fission Yeast
- (2008) Maria I. Davidich et al. PLoS One
- An Auxin Transport-Based Model of Root Branching in Arabidopsis thaliana
- (2008) Mikaël Lucas et al. PLoS One
- Real-time luminescence monitoring of cell-cycle and respiratory oscillations in yeast
- (2008) J. B. Robertson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Ordered cyclic motifs contribute to dynamic stability in biological and engineered networks
- (2008) A. Ma'ayan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Feedback Loops Shape Cellular Signals in Space and Time
- (2008) O. Brandman et al. SCIENCE
- Developmental Patterning by Mechanical Signals in Arabidopsis
- (2008) O. Hamant et al. SCIENCE
- Plant systems biology comes of age
- (2008) Joshua S. Yuan et al. TRENDS IN PLANT SCIENCE
- A Mutual Support Mechanism through Intercellular Movement of CAPRICE and GLABRA3 Can Pattern the Arabidopsis Root Epidermis
- (2008) Natasha Saint Savage et al. PLOS BIOLOGY
- Root System Architecture from Coupling Cell Shape to Auxin Transport
- (2008) Marta Laskowski et al. PLOS BIOLOGY
- Flux-Based Transport Enhancement as a Plausible Unifying Mechanism for Auxin Transport in Meristem Development
- (2008) Szymon Stoma et al. PLoS Computational Biology
- Inferring regulatory networks
- (2007) Huai Li Frontiers in Bioscience-Landmark
- Crop growth modelling and crop yield forecasting using satellite-derived meteorological inputs
- (2007) A.J.W. de Wit et al. International Journal of Applied Earth Observation and Geoinformation
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationPublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More