Gene clusters reflecting macrodomain structure respond to nucleoid perturbations

Periodic pattern detection in sparse boolean sequences

(2010) Ivan Junier et al.   Algorithms for Molecular Biology

Escherichia coli K-12 possesses multiple cryptic but functional chaperone-usher fimbriae with distinct surface specificities

(2010) Charalampia-Georgia Korea et al.   ENVIRONMENTAL MICROBIOLOGY

Regulation of the Escherichia coli csgD promoter: interplay between five transcription factors

(2010) H. Ogasawara et al.   MICROBIOLOGY-SGM

General organisational principles of the transcriptional regulation system: a tree or a circle?

(2010) Georgi Muskhelishvili et al.   Molecular BioSystems

Chromosomal periodicity and positional networks of genes in Escherichia coli

(2010) Anthony Mathelier et al.   Molecular Systems Biology

A three-dimensional model of the yeast genome

(2010) Zhijun Duan et al.   NATURE

Bacterial nucleoid-associated proteins, nucleoid structure and gene expression

(2010) Shane C. Dillon et al.   NATURE REVIEWS MICROBIOLOGY

Strong intranucleoid interactions organize the Escherichia coli chromosome into a nucleoid filament

(2010) P. A. Wiggins et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RcsB plays a central role in H-NS-dependent regulation of motility and acid stress resistance in Escherichia coli

(2010) Evelyne Krin et al.   RESEARCH IN MICROBIOLOGY

Ranges of control in the transcriptional regulation of Escherichia coli

(2009) Nikolaus Sonnenschein et al.   BMC Systems Biology

Bacterial nucleotide-based second messengers

(2009) Christina Pesavento et al.   CURRENT OPINION IN MICROBIOLOGY

Coordination of genomic structure and transcription by the main bacterial nucleoid-associated protein HU

(2009) Michael Berger et al.   EMBO REPORTS

Synergistic role of curli and cellulose in cell adherence and biofilm formation of attaching and effacingEscherichia coliand identification of Fis as a negative regulator of curli

(2009) Zeus Saldaña et al.   ENVIRONMENTAL MICROBIOLOGY

Can the Protein Occupancy Landscape Show the Topologically Isolated Chromosomal Domains in the E. coli Genome?: An Exciting Prospect

(2009) Byung-Kwan Cho et al.   MOLECULAR CELL

Protein Occupancy Landscape of a Bacterial Genome

(2009) Tiffany Vora et al.   MOLECULAR CELL

Principles of c-di-GMP signalling in bacteria

(2009) Regine Hengge   NATURE REVIEWS MICROBIOLOGY

The HU Regulon Is Composed of Genes Responding to Anaerobiosis, Acid Stress, High Osmolarity and SOS Induction

(2009) Jacques Oberto et al.   PLoS One

Visualizing genetic loci and molecular machines in living bacteria

(2008) Xindan Wang et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Dissecting the logical types of network control in gene expression profiles

(2008) Carsten Marr et al.   BMC Systems Biology

The MatP/matS Site-Specific System Organizes the Terminus Region of the E. coli Chromosome into a Macrodomain

(2008) Romain Mercier et al.   CELL

New insights into transcriptional regulation by H-NS

(2008) Ferric C Fang et al.   CURRENT OPINION IN MICROBIOLOGY

Genome-wide analysis of Fis binding in Escherichia coli indicates a causative role for A-/AT-tracts

(2008) B.-K. Cho et al.   GENOME RESEARCH

DNA dynamics vary according to macrodomain topography in theE. colichromosome

(2008) Olivier Espeli et al.   MOLECULAR MICROBIOLOGY

EcoCyc: A comprehensive view of Escherichia coli biology

(2008) I. M. Keseler et al.   NUCLEIC ACIDS RESEARCH

Transcriptional regulation constrains the organization of genes on eukaryotic chromosomes

(2008) S. C. Janga et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Escherichia coli and its chromosome

(2008) Rodrigo Reyes-Lamothe et al.   TRENDS IN MICROBIOLOGY

Dynamics of Genome Rearrangement in Bacterial Populations

(2008) Aaron E. Darling et al.   PLoS Genetics